RchiOBHm_Chr6g0259711

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
14939354 .. 14940911
1558 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGGAGAAAGCTTTCACTCTGGTTCAGACAATTGCCGTTGCAACTGTCTTCTCTGCGGTCTCCGGCTGGTACGGATTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTTGGAAGCTTAATCGAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCACCTCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.24

Weight (kDa)

6.54

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 136
AclWI GGATC 1 cut(s) 149
AfaI GTAC 1 cut(s) 71
AluBI AGCT 3 cut(s) 11, 109, 117
AluI AGCT 3 cut(s) 11, 109, 117
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 149
Asp700I GAANNNNTTC 2 cut(s) 11, 129
BbsI GAAGAC 2 cut(s) 40, 132
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 64
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 40, 132
BsaI GGTCTC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 2 cut(s) 56, 136
BspPI GGATC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 64
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 154
BstV2I GAAGAC 2 cut(s) 40, 132
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 11, 66, 109, 117
CviKI_1 RGCY 4 cut(s) 11, 66, 109, 117
CviQI GTAC 1 cut(s) 70
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 82
FaiI YATR 1 cut(s) 80
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 9, 115
HinfI GANTC 3 cut(s) 75, 92, 142
HpaII CCGG 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 27, 154
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 5, 52, 76, 152
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 40, 99, 137
MfeI CAATTG 1 cut(s) 30
MluCI AATT 2 cut(s) 30, 148
MnlI CCTC 1 cut(s) 171
MroXI GAANNNNTTC 2 cut(s) 11, 129
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 30
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 82
PdmI GAANNNNTTC 2 cut(s) 11, 129
PfeI GAWTC 3 cut(s) 75, 92, 142
PkrI GCNGC 1 cut(s) 137
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 1 cut(s) 154
SetI ASST 5 cut(s) 13, 111, 119, 132, 163
SgeI CNNG 7 cut(s) 32, 75, 79, 91, 111, 122, 151
Sse9I AATT 2 cut(s) 30, 148
SsiI CCGC 2 cut(s) 56, 136
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 30, 148
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 75, 92, 142
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 87
XmnI GAANNNNTTC 2 cut(s) 11, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.