RchiOBHm_Chr6g0262621

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017653
Physical Location & Seq
Forward (+)
17472124 .. 17473281
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGAGCCCGGCCAGAGAGAAAGGCGTGATGGTGATCGGAGAGGACTCGTTGAAGAAGGCAAATTGGAATAGAAATCGACTTGGCTTGCCGGCGAGGAGGCCGTGCAAGCCTTTCGGCGAAGTGCATTTGAAGAGAGGACAGAGCTACATGGATGCTAAAGATCTTTTCCCCAGAGTTTTGTCAAGCAATGATTTAGTGCCTTCAGAAGATATAGTTGTTTCAACAGAGAAGTTACGATTAAGATTGGCACAGGAGGGAGTTGGTGAGCTAGTTATCAAAGGCTGCGAATCAATTATGCTTTTAGAAGTCTCAGAGCTGCAAAACCAGTTGAAGGCTCTTCAGAGTAAACATGTTATGTTGTTAGACACATTGAGACAATTGGAGACAGAGAAAATAGAGCTGGAAACTACAGTAGTGGACGAAACAAAGGAGCGTGAGTCATACTGCAGTCAGGGCAATAGGAGACATGGTGGTGATCAATCGATGGGTGGTTGGTCGATCTATGGTGATCGATCTGTGTTAGGCAGTGGTTCTGATGGCAGCGATCGAAGCTTGATGGCAGAGATCGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

5.74

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
rosa_chinensis RchiOBHm_Chr6g0262621 RchiOBHm_Chr7g0222411
rosa_multiflora Rmu_co8309101.1_g000001
rosa_samantha Rh4AG314000 Rh4CG336900 Rh7AG350400 Rh7CG367900 Rh7DG347400
rosa_wichuraiana Rw7G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 186, 323
AfiI CCNNNNNNNGG 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 52, 130, 222, 331
AluBI AGCT 6 cut(s) 144, 268, 316, 400, 552, 572
AluI AGCT 6 cut(s) 144, 268, 316, 400, 552, 572
Alw26I GTCTC 4 cut(s) 313, 367, 377, 457
AoxI GGCC 2 cut(s) 9, 98
ApeKI GCWGC 3 cut(s) 282, 316, 540
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 4 cut(s) 43, 275, 485, 518
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 269, 303, 552
BccI CCATC 4 cut(s) 22, 478, 530, 550
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 4 cut(s) 313, 367, 377, 457
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 408, 445
BglII AGATCT 1 cut(s) 160
BisI GCNGC 3 cut(s) 283, 317, 541
BlsI GCNGC 3 cut(s) 284, 318, 542
Bme1390I CCNGG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 2 cut(s) 482, 511
BsaBI GATNNNNATC 1 cut(s) 32
BsaXI ACNNNNNCTCC 4 cut(s) 422, 452, 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 32
BseCI ATCGAT 2 cut(s) 482, 511
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 269, 303, 552
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 2 cut(s) 11, 100
BshVI ATCGAT 2 cut(s) 482, 511
BsiEI CGRYCG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 8, 89
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 4 cut(s) 313, 367, 377, 457
BsnI GGCC 2 cut(s) 11, 100
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
BspANI GGCC 2 cut(s) 11, 100
BspCNI CTCAG 1 cut(s) 323
BspDI ATCGAT 2 cut(s) 482, 511
BspMAI CTGCAG 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 125, 342
BstC8I GCNNGC 3 cut(s) 86, 90, 107
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 8 cut(s) 36, 163, 478, 501, 511, 515, 547, 567
BstMAI GTCTC 4 cut(s) 313, 367, 377, 457
BstMBI GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 3 cut(s) 106, 453, 549
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 2 cut(s) 408, 445
BstV1I GCAGC 3 cut(s) 269, 303, 552
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 2 cut(s) 482, 511
BsuRI GGCC 2 cut(s) 11, 100
BsuTUI ATCGAT 2 cut(s) 482, 511
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 86, 90, 107
Cfr10I RCCGGY 1 cut(s) 88
ClaI ATCGAT 2 cut(s) 482, 511
CviAII CATG 3 cut(s) 148, 350, 467
DdeI CTNAG 1 cut(s) 310
DpnI GATC 8 cut(s) 35, 162, 477, 500, 510, 514, 546, 566
DpnII GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 125, 342
EarI CTCTTC 2 cut(s) 125, 342
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 2 cut(s) 186, 323
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 151, 353, 470
FaiI YATR 8 cut(s) 149, 212, 296, 351, 356, 442, 468, 504
FatI CATG 3 cut(s) 147, 349, 466
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 3 cut(s) 283, 317, 541
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 283, 317, 541
FspBI CTAG 1 cut(s) 269
GluI GCNGC 3 cut(s) 283, 317, 541
HaeIII GGCC 2 cut(s) 11, 100
HapII CCGG 2 cut(s) 8, 89
Hin1II CATG 3 cut(s) 151, 353, 470
HindIII AAGCTT 2 cut(s) 550, 570
HinfI GANTC 3 cut(s) 44, 287, 437
HpaII CCGG 2 cut(s) 8, 89
HphI GGTGA 4 cut(s) 43, 275, 485, 518
Hpy166II GTNNAC 2 cut(s) 347, 418
Hpy188I TCNGA 5 cut(s) 38, 205, 313, 342, 535
Hpy8I GTNNAC 2 cut(s) 347, 418
HpyAV CCTTC 3 cut(s) 49, 210, 325
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 105, 124, 319, 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 453, 549
HpyF3I CTNAG 1 cut(s) 310
Hsp92II CATG 3 cut(s) 151, 353, 470
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 8 cut(s) 21, 25, 102, 184, 236, 338, 386, 437
Lsp1109I GCAGC 3 cut(s) 269, 303, 552
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 231
MalI GATC 8 cut(s) 35, 162, 477, 500, 510, 514, 546, 566
MboI GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
MboII GAAGA 4 cut(s) 64, 142, 218, 329
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 61, 291, 377
MlyI GAGTC 2 cut(s) 38, 446
MnlI CCTC 5 cut(s) 34, 87, 90, 128, 247
MroNI GCCGGC 1 cut(s) 88
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 8, 89
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 106, 453, 549
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 8
NdeII GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 3 cut(s) 151, 353, 470
NspI RCATGY 1 cut(s) 353
PciI ACATGT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 284, 318, 542
Ple19I CGATCG 1 cut(s) 547
PleI GAGTC 2 cut(s) 38, 445
PpsI GAGTC 2 cut(s) 38, 445
PscI ACATGT 1 cut(s) 349
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 160
PvuI CGATCG 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 3 cut(s) 283, 317, 541
Sau3AI GATC 8 cut(s) 33, 160, 475, 498, 508, 512, 544, 564
SchI GAGTC 2 cut(s) 38, 446
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 146, 270, 318, 402, 554, 574
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 2 cut(s) 408, 445
SmiMI CAYNNNNRTG 1 cut(s) 471
Sse9I AATT 3 cut(s) 61, 291, 377
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 6 cut(s) 76, 482, 497, 511, 547, 567
TasI AATT 3 cut(s) 61, 291, 377
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 532
TseI GCWGC 3 cut(s) 282, 316, 540
TspRI CASTG 1 cut(s) 532
XceI RCATGY 1 cut(s) 353
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.