Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309101.1

Orthogroup ID

OG0017653

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 877

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

agaggacagagctgcatggattgaggcattgctggctgctaaagatcttttccccagagttttgtcaagcaatgatttagtgccttcagaagatatagttgtttcaacagagaagttacgattaagattggcacaggagggagttggtgagccagttatcaaagactgcgagtcaattatgcttttagaagtctcagagctgcaaaaccagttaaaggctcttcagagtaaacatgttatgttgttagacacattgagacaattggagacagagaaaatagagctggaaactacagtagtggacgaaacaaaggagcgcgagtcatactgcagtcagggcaataggagacatagtgatttttattccgtcatgtcagagggcagtggaagtgattctgatgcagaaaatgaaagtcaagatggaggagatgttgaaacagatgaagatgaaggagatcgattcatgaaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP PH_11

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

4.32

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
rosa_chinensis	RchiOBHm_Chr6g0262621 RchiOBHm_Chr7g0222411
rosa_multiflora	Rmu_co8309101.1_g000001
rosa_samantha	Rh4AG314000 Rh4CG336900 Rh7AG350400 Rh7CG367900 Rh7DG347400
rosa_wichuraiana	Rw7G029940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	70, 207
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	106, 435
AhdI	GACNNNNNGTC	1 cut(s)	170
AluBI	AGCT	3 cut(s)	12, 200, 284
AluI	AGCT	3 cut(s)	12, 200, 284
Alw26I	GTCTC	4 cut(s)	197, 251, 261, 341
ApeKI	GCWGC	3 cut(s)	12, 36, 200
ApoI	RAATTY	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	23, 187
BccI	CCATC	1 cut(s)	414
BcoDI	GTCTC	4 cut(s)	197, 251, 261, 341
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	2 cut(s)	292, 329
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	13, 37, 201
BlsI	GCNGC	3 cut(s)	14, 38, 202
BmeRI	GACNNNNNGTC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	458
BsaXI	ACNNNNNCTCC	6 cut(s)	306, 336, 338, 368, 415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	153, 209
Bse3DI	GCAATG	2 cut(s)	27, 77
BseCI	ATCGAT	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	2 cut(s)	27, 77
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	153, 209
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	23, 187
Bsh1236I	CGCG	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	4 cut(s)	197, 251, 261, 341
Bsp143I	GATC	2 cut(s)	44, 455
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	27, 77
BsrI	ACTGG	2 cut(s)	153, 209
BssMI	GATC	2 cut(s)	44, 455
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	47, 458
BstMAI	GTCTC	4 cut(s)	197, 251, 261, 341
BstMBI	GATC	2 cut(s)	44, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 337
BstNSI	RCATGY	1 cut(s)	237
BstSFI	CTRYAG	2 cut(s)	292, 329
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	23, 187
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	458
BsuTUI	ATCGAT	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	458
CviAII	CATG	4 cut(s)	16, 234, 371, 464
CviJI	RGCY	6 cut(s)	12, 36, 152, 200, 219, 284
CviKI_1	RGCY	6 cut(s)	12, 36, 152, 200, 219, 284
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	46, 457
DpnII	GATC	2 cut(s)	44, 455
DriI	GACNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	70, 207
FaeI	CATG	4 cut(s)	19, 237, 374, 467
FaiI	YATR	9 cut(s)	17, 96, 180, 235, 240, 326, 352, 372, 465
FatI	CATG	4 cut(s)	15, 233, 370, 463
Fnu4HI	GCNGC	3 cut(s)	13, 37, 201
Fsp4HI	GCNGC	3 cut(s)	13, 37, 201
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	3 cut(s)	13, 37, 201
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	19, 237, 374, 467
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	4 cut(s)	171, 321, 393, 460
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	231, 302
Hpy188I	TCNGA	5 cut(s)	89, 197, 226, 377, 398
Hpy188III	TCNNGA	2 cut(s)	417, 464
Hpy8I	GTNNAC	2 cut(s)	231, 302
HpyAV	CCTTC	2 cut(s)	94, 444
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	15, 203, 331, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 337
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	19, 237, 374, 467
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	44, 455
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	18, 68, 120, 166, 222, 270, 321
Lsp1109I	GCAGC	2 cut(s)	23, 187
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	46, 457
MboI	GATC	2 cut(s)	44, 455
MboII	GAAGA	3 cut(s)	102, 213, 456
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	3 cut(s)	175, 261, 468
MlyI	GAGTC	2 cut(s)	180, 330
MnlI	CCTC	4 cut(s)	17, 131, 371, 417
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	123, 213
MunI	CAATTG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	33, 337
NdeII	GATC	2 cut(s)	44, 455
NlaIII	CATG	4 cut(s)	19, 237, 374, 467
NspI	RCATGY	1 cut(s)	237
PagI	TCATGA	1 cut(s)	463
PciI	ACATGT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	393, 460
PkrI	GCNGC	3 cut(s)	14, 38, 202
PleI	GAGTC	2 cut(s)	179, 329
PpsI	GAGTC	2 cut(s)	179, 329
PscI	ACATGT	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	123, 213
SatI	GCNGC	3 cut(s)	13, 37, 201
Sau3AI	GATC	2 cut(s)	44, 455
SchI	GAGTC	2 cut(s)	180, 330
SetI	ASST	3 cut(s)	14, 202, 286
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	2 cut(s)	292, 329
Sse9I	AATT	3 cut(s)	175, 261, 468
SspMI	CTAG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	175, 261, 468
TfiI	GAWTC	2 cut(s)	393, 460
Tru1I	TTAA	2 cut(s)	123, 213
Tru9I	TTAA	2 cut(s)	123, 213
TscAI	CASTG	1 cut(s)	389
TseI	GCWGC	3 cut(s)	12, 36, 200
TspDTI	ATGAA	4 cut(s)	424, 452, 457, 463
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.