RchiOBHm_Chr7g0222411

Oxysterol-binding protein-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
43728304 .. 43729315
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19906

Sequence Viewer

Length: 684 bp
ATGCTCATGACCTCTACTTTTTTACCTGTTTCCTTTTGGTTACTGAATTTGAAGTGGTCTGGTTTACAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAAAGGCTTTCCATATTCACAGGAACTAAAACTCTTCACTTGCGTTGTTTATCTAGAGAGGACAGAGCTGCATGGATTGAGGCATTGCTGGCTGCTAAAGATCTTTTCCCCAGAGTTTTGTCAAGCAATGATTTAGTGCCTTCAGAAGATATAGTTGTTTCAACAGAGAAGTTACGATTAAGATTGGCACATGAGGGAGTTGGTGAGCCAGTTATCAAAGACTGCGAGTCAATTATGCTTTTAGAAGTCTCAGAGCTGCAAAACCAGTTGAAGGCTCTTCAGAGTAAACATGTTATGTTGTTAGACACATTGAGACAATTGGAGACAGAGAAAATAGAGCTGGAAACTACAGTAGTGGACGAAACAAAGAAGCGTGAGTCATACTGCAGTCAGGGCAATAGGAGACATAGTGAGGGCAGTGGAACTGATTCTGATGCAGAAAATGAAAGTCAAGATGGAGGAGATGTTGAAACAGATGAAGATGAAGGAACATACTTTGATACTTATGATATTTTGTCTTCATATGCTTTAAGAAGTGCATACTACCGGAGTAGAGAAGGTTTGCGGTTTAGCACACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

4.94

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017653)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 667
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 228, 365
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 5 cut(s) 52, 78, 264, 373, 572
AhdI GACNNNNNGTC 1 cut(s) 328
AluBI AGCT 3 cut(s) 170, 358, 442
AluI AGCT 3 cut(s) 170, 358, 442
Alw26I GTCTC 5 cut(s) 76, 355, 409, 419, 499
ApeKI GCWGC 3 cut(s) 170, 194, 358
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 157, 181, 345
BccI CCATC 1 cut(s) 551
BcoDI GTCTC 5 cut(s) 76, 355, 409, 419, 499
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 450, 487
BglII AGATCT 1 cut(s) 202
BisI GCNGC 3 cut(s) 171, 195, 359
BlsI GCNGC 3 cut(s) 172, 196, 360
BmeRI GACNNNNNGTC 1 cut(s) 328
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 552, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 311, 367
Bse3DI GCAATG 2 cut(s) 185, 235
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 2 cut(s) 185, 235
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 311, 367
BseRI GAGGAG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 157, 181, 345
BsiSI CCGG 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 5 cut(s) 76, 355, 409, 419, 499
Bso31I GGTCTC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 667
BspCNI CTCAG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 185, 235
BsrI ACTGG 2 cut(s) 311, 367
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 3 cut(s) 79, 141, 384
BstC8I GCNNGC 2 cut(s) 88, 192
BstDEI CTNAG 1 cut(s) 352
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 5 cut(s) 76, 355, 409, 419, 499
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 191, 495
BstNSI RCATGY 1 cut(s) 395
BstSFI CTRYAG 2 cut(s) 450, 487
BstV1I GCAGC 3 cut(s) 157, 181, 345
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 88, 192
CciI TCATGA 1 cut(s) 6
CviAII CATG 4 cut(s) 7, 174, 293, 392
CviJI RGCY 7 cut(s) 109, 170, 194, 310, 358, 377, 442
CviKI_1 RGCY 7 cut(s) 109, 170, 194, 310, 358, 377, 442
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DriI GACNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 79, 141, 384
Eam1105I GACNNNNNGTC 1 cut(s) 328
EarI CTCTTC 3 cut(s) 79, 141, 384
Eco31I GGTCTC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 228, 365
FaeI CATG 4 cut(s) 10, 177, 296, 395
FatI CATG 4 cut(s) 6, 173, 292, 391
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 3 cut(s) 171, 195, 359
Fsp4HI GCNGC 3 cut(s) 171, 195, 359
FspBI CTAG 1 cut(s) 156
GluI GCNGC 3 cut(s) 171, 195, 359
HapII CCGG 1 cut(s) 649
Hin1II CATG 4 cut(s) 10, 177, 296, 395
HinfI GANTC 3 cut(s) 329, 479, 530
HpaII CCGG 1 cut(s) 649
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 65, 389, 460
Hpy188I TCNGA 5 cut(s) 97, 247, 355, 384, 535
Hpy188III TCNNGA 3 cut(s) 7, 156, 554
Hpy8I GTNNAC 3 cut(s) 65, 389, 460
HpyAV CCTTC 4 cut(s) 252, 367, 581, 653
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 5 cut(s) 173, 361, 489, 539, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 495
HpyF3I CTNAG 1 cut(s) 352
Hsp92II CATG 4 cut(s) 10, 177, 296, 395
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 384
Lsp1109I GCAGC 3 cut(s) 157, 181, 345
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 39, 273
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 6 cut(s) 66, 128, 260, 371, 593, 612
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 202
MluCI AATT 4 cut(s) 46, 78, 333, 419
MlyI GAGTC 2 cut(s) 338, 488
MnlI CCTC 6 cut(s) 22, 154, 175, 289, 508, 554
MroXI GAANNNNTTC 1 cut(s) 529
MseI TTAA 2 cut(s) 281, 632
MspI CCGG 1 cut(s) 649
MunI CAATTG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 191, 495
NdeI CATATG 1 cut(s) 625
NdeII GATC 1 cut(s) 202
NlaIII CATG 4 cut(s) 10, 177, 296, 395
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 6
PciI ACATGT 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 530
PkrI GCNGC 3 cut(s) 172, 196, 360
PleI GAGTC 2 cut(s) 337, 487
PpsI GAGTC 2 cut(s) 337, 487
PscI ACATGT 1 cut(s) 391
PstI CTGCAG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 281, 632
SatI GCNGC 3 cut(s) 171, 195, 359
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 2 cut(s) 338, 488
SetI ASST 7 cut(s) 14, 28, 72, 172, 360, 444, 664
SfaNI GCATC 1 cut(s) 526
SfcI CTRYAG 2 cut(s) 450, 487
Sse9I AATT 4 cut(s) 46, 78, 333, 419
SsiI CCGC 1 cut(s) 667
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 454
TasI AATT 4 cut(s) 46, 78, 333, 419
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 2 cut(s) 281, 632
Tru9I TTAA 2 cut(s) 281, 632
TscAI CASTG 1 cut(s) 526
TseI GCWGC 3 cut(s) 170, 194, 358
TspDTI ATGAA 4 cut(s) 561, 594, 600, 612
TspRI CASTG 1 cut(s) 526
XapI RAATTY 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 155
XceI RCATGY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 529
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.