Rw7G029940

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017653
Physical Location & Seq
Forward (+)
42085779 .. 42088009
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029940.1

Sequence Viewer

Length: 1248 bp
ATGAACCCGCTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCAGGCCGACCCGGTCACGGCGAAGCAGTCTGGTCACTACCAGCTCGGACTCGACGCGGCGGTTCCGGTTCGAAACGTCAGCTACGGCTCGAAGCCGAGCTACTCCGCTCAGGTCTCGTCGGCGGGGACCGAATCGGACAGAGCCTCGTCCGCCGCGGCGCAACGCGAGGTTGAGGAAGCGTTCTGCGAGCCGAGAGATTCGAAGGCGTTCGGCGTTCGCCGGAATTCTGTACAAGTGGGTGAACTACGGCAAGGGGTGGAGGTCGAGGTGGTTTCTGCTGGAAGACGGCGTGCTTTCGTATTACAAGGTTCATGGACCGGACTAGATTCTGATGAGCCCGGCCAGAGAGAAAGGCGTGACGGTGATCGGAGAGGACTCGTTGAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAAAGGCTTTCCATATTCACAGGAACTAAAACTCTTCACTTGTGTTGTTTATCTAGAGAGGACAGAGCTGCATGGATTGAGGCATTGCTGGCTGCTAAAGATCTTTTCCCCAGACTTTTGTCAAGCAATGATTTAGTGCCTTCAGAAGATATAGTTGTTTCAACAGAGAAGTTACGATTAAGATTGGCACAGGAGGGAGTTGGTGAGCCAGTTATCAAAGACTGCGAGTCAATTATGCTTTTAGAAGTCTCAGAGCTGCAAAACCAGTTAAAGGCTCTTCAGAGTAAACATGTTATGTTGTTAGACACATTGAGACAATTGGAGACAGAGAAAATAGAGCTGGAAACTACAGTAGTGGACGAAACAAAGGAGCGTGAGTCATACTGTAGTCAGGGCAATAGGAGACATAGTGATTTTTATTCCGTCATGTCAGAGGGCAGTGGAAGTGATTCTGATGCAGAAAATGAAAGTCAAGATGGAGGAGATGTTGAAACAGATGAAGATGAAGGAACATACTTTGATACTTATGATATTTTGTCTTCAGATGCTTTAAGAAGTGCATCCTACCGGAGTAGAGAAGATGCTTTAAGAAGTGCTTCCTATCGGAGTAGGGATGGTTTGGGAAACGTTGGTGGAGATTCTCTCTTTTCTGATCCATTGCATGCAGTTCAGGAGATCATGACAGTTAAATATCCATCTGTGAAACGGAGGGATAATTTGCCAGAACCAAAGGAGAAAGATAAGCCTATTGGCTTGTGGTCAATTATCAAGGACAATTTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

415

Amino Acids

45.9

Weight (kDa)

4.89

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
rosa_chinensis RchiOBHm_Chr6g0262621 RchiOBHm_Chr7g0222411
rosa_multiflora Rmu_co8309101.1_g000001
rosa_samantha Rh4AG314000 Rh4CG336900 Rh7AG350400 Rh7CG367900 Rh7DG347400
rosa_wichuraiana Rw7G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 3 cut(s) 101, 200, 210
AciI CCGC 8 cut(s) 8, 101, 104, 150, 167, 195, 198, 200
AclI AACGTT 1 cut(s) 1089
AclWI GGATC 1 cut(s) 1109
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 3 cut(s) 588, 725, 987
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 61, 733
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 3 cut(s) 438, 624, 953
AhdI GACNNNNNGTC 1 cut(s) 688
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 6 cut(s) 88, 126, 144, 530, 718, 802
AluI AGCT 6 cut(s) 88, 126, 144, 530, 718, 802
Alw26I GTCTC 6 cut(s) 163, 436, 715, 769, 779, 859
AlwI GGATC 1 cut(s) 1109
AoxI GGCC 2 cut(s) 48, 385
ApeKI GCWGC 4 cut(s) 15, 530, 554, 718
ApoI RAATTY 1 cut(s) 268
Asp700I GAANNNNTTC 3 cut(s) 251, 910, 1057
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 43, 171, 360
AsuC2I CCSGG 2 cut(s) 56, 384
AsuHPI GGTGA 3 cut(s) 296, 419, 677
AsuII TTCGAA 2 cut(s) 115, 245
AvaII GGWCC 3 cut(s) 43, 171, 360
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 2 cut(s) 334, 993
BbvI GCAGC 4 cut(s) 2, 517, 541, 705
BccI CCATC 3 cut(s) 932, 1070, 1165
BceAI ACGGC 4 cut(s) 78, 145, 308, 347
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 2 cut(s) 56, 384
BcoDI GTCTC 6 cut(s) 163, 436, 715, 769, 779, 859
BfaI CTAG 2 cut(s) 368, 516
BfmI CTRYAG 2 cut(s) 810, 847
BglII AGATCT 1 cut(s) 562
BisI GCNGC 7 cut(s) 16, 102, 198, 201, 531, 555, 719
BlsI GCNGC 7 cut(s) 17, 103, 199, 202, 532, 556, 720
Bme1390I CCNGG 3 cut(s) 47, 56, 384
Bme18I GGWCC 3 cut(s) 43, 171, 360
BmeRI GACNNNNNGTC 1 cut(s) 688
BmgT120I GGNCC 3 cut(s) 43, 171, 360
BmiI GGNNCC 3 cut(s) 44, 108, 172
BmrFI CCNGG 3 cut(s) 47, 56, 384
BmsI GCATC 4 cut(s) 907, 997, 1031, 1033
BoxI GACNNNNGTC 1 cut(s) 580
BpiI GAAGAC 2 cut(s) 334, 993
BplI GAGNNNNNCTC 2 cut(s) 1089, 1121
Bpu10I CCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 2 cut(s) 115, 245
BpuMI CCSGG 2 cut(s) 56, 384
Bsa29I ATCGAT 1 cut(s) 36
BsaI GGTCTC 2 cut(s) 163, 436
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 4 cut(s) 25, 109, 362, 1029
BsaXI ACNNNNNCTCC 6 cut(s) 824, 854, 856, 886, 933, 963
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 733
Bse1I ACTGG 2 cut(s) 671, 727
Bse3DI GCAATG 4 cut(s) 18, 545, 595, 1118
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 1022, 1081
BseLI CCNNNNNNNGG 2 cut(s) 61, 733
BseMI GCAATG 4 cut(s) 18, 545, 595, 1118
BseMII CTCAG 2 cut(s) 167, 726
BseNI ACTGG 2 cut(s) 671, 727
BseRI GAGGAG 1 cut(s) 957
BseXI GCAGC 4 cut(s) 2, 517, 541, 705
Bsh1236I CGCG 3 cut(s) 101, 200, 210
Bsh1285I CGRYCG 2 cut(s) 36, 40
BshFI GGCC 2 cut(s) 50, 387
BshVI ATCGAT 1 cut(s) 36
BsiEI CGRYCG 2 cut(s) 36, 40
BsiSI CCGG 7 cut(s) 26, 56, 110, 265, 363, 384, 1030
BslFI GGGAC 2 cut(s) 56, 184
BslI CCNNNNNNNGG 2 cut(s) 61, 733
BsmAI GTCTC 6 cut(s) 163, 436, 715, 769, 779, 859
BsmFI GGGAC 2 cut(s) 56, 184
BsnI GGCC 2 cut(s) 50, 387
Bso31I GGTCTC 2 cut(s) 163, 436
Bsp119I TTCGAA 2 cut(s) 115, 245
Bsp1286I GDGCHC 1 cut(s) 384
Bsp1407I TGTACA 1 cut(s) 274
Bsp143I GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
BspACI CCGC 8 cut(s) 8, 101, 104, 150, 167, 195, 198, 200
BspANI GGCC 2 cut(s) 50, 387
BspCNI CTCAG 2 cut(s) 166, 725
BspDI ATCGAT 1 cut(s) 36
BspFNI CGCG 3 cut(s) 101, 200, 210
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 3 cut(s) 44, 108, 172
BspPI GGATC 1 cut(s) 1109
BspQI GCTCTTC 1 cut(s) 744
BspT104I TTCGAA 2 cut(s) 115, 245
BspTNI GGTCTC 2 cut(s) 163, 436
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 4 cut(s) 18, 545, 595, 1118
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 2 cut(s) 671, 727
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 5 cut(s) 407, 814, 848, 1147, 1245
Bst6I CTCTTC 3 cut(s) 439, 501, 744
BstAUI TGTACA 1 cut(s) 274
BstBI TTCGAA 2 cut(s) 115, 245
BstC8I GCNNGC 5 cut(s) 233, 336, 448, 552, 1125
BstDEI CTNAG 2 cut(s) 153, 712
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 1022, 1081
BstFNI CGCG 3 cut(s) 101, 200, 210
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 6 cut(s) 36, 40, 412, 565, 1117, 1140
BstMAI GTCTC 6 cut(s) 163, 436, 715, 769, 779, 859
BstMBI GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
BstMCI CGRYCG 2 cut(s) 36, 40
BstMWI GCNNNNNNNGC 2 cut(s) 194, 551
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 755, 1127
BstPAI GACNNNNGTC 1 cut(s) 580
BstSCI CCNGG 3 cut(s) 45, 54, 382
BstSFI CTRYAG 2 cut(s) 810, 847
BstUI CGCG 3 cut(s) 101, 200, 210
BstV1I GCAGC 4 cut(s) 2, 517, 541, 705
BstV2I GAAGAC 2 cut(s) 334, 993
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
Bsu15I ATCGAT 1 cut(s) 36
BsuRI GGCC 2 cut(s) 50, 387
BsuTUI ATCGAT 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 1022, 1081
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 5 cut(s) 233, 336, 448, 552, 1125
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 43, 171, 360
Cfr42I CCGCGG 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 36
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 275
CviAII CATG 6 cut(s) 357, 534, 752, 889, 1124, 1141
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 2 cut(s) 153, 712
DpnI GATC 6 cut(s) 35, 39, 411, 564, 1116, 1139
DpnII GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
DriI GACNNNNNGTC 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 3 cut(s) 439, 501, 744
Eam1105I GACNNNNNGTC 1 cut(s) 688
EarI CTCTTC 3 cut(s) 439, 501, 744
EciI GGCGGA 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 2 cut(s) 163, 436
Eco47I GGWCC 3 cut(s) 43, 171, 360
Eco57I CTGAAG 3 cut(s) 588, 725, 987
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 6 cut(s) 360, 537, 755, 892, 1127, 1144
FalI AAGNNNNNCTT 2 cut(s) 1042, 1074
FaqI GGGAC 2 cut(s) 56, 184
FatI CATG 6 cut(s) 356, 533, 751, 888, 1123, 1140
FauI CCCGC 2 cut(s) 15, 160
Fnu4HI GCNGC 7 cut(s) 16, 102, 198, 201, 531, 555, 719
FokI GGATG 2 cut(s) 1009, 1088
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 7 cut(s) 16, 102, 198, 201, 531, 555, 719
FspBI CTAG 2 cut(s) 368, 516
GlaI GCGC 1 cut(s) 204
GluI GCNGC 7 cut(s) 16, 102, 198, 201, 531, 555, 719
HaeIII GGCC 2 cut(s) 50, 387
HapII CCGG 7 cut(s) 26, 56, 110, 265, 363, 384, 1030
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 205
Hin1II CATG 6 cut(s) 360, 537, 755, 892, 1127, 1144
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 9 cut(s) 93, 176, 242, 371, 420, 689, 839, 911, 1100
HpaII CCGG 7 cut(s) 26, 56, 110, 265, 363, 384, 1030
HphI GGTGA 3 cut(s) 296, 419, 677
Hpy166II GTNNAC 3 cut(s) 287, 749, 820
Hpy188III TCNNGA 5 cut(s) 41, 516, 935, 1133, 1141
Hpy8I GTNNAC 3 cut(s) 287, 749, 820
Hpy99I CGWCG 2 cut(s) 101, 166
HpyAV CCTTC 3 cut(s) 241, 612, 962
HpyCH4III ACNGT 5 cut(s) 407, 814, 848, 1147, 1245
HpyCH4IV ACGT 2 cut(s) 120, 1089
HpyCH4V TGCA 7 cut(s) 18, 533, 721, 920, 1022, 1123, 1127
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 551
HpyF3I CTNAG 2 cut(s) 153, 712
HpySE526I ACGT 2 cut(s) 120, 1089
Hsp92II CATG 6 cut(s) 360, 537, 755, 892, 1127, 1144
HspAI GCGC 1 cut(s) 203
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 2 cut(s) 28, 832
Lsp1109I GCAGC 4 cut(s) 2, 517, 541, 705
LweI GCATC 4 cut(s) 907, 997, 1031, 1033
MaeI CTAG 2 cut(s) 368, 516
MaeII ACGT 2 cut(s) 120, 1089
MaeIII GTNAC 4 cut(s) 58, 77, 401, 633
MalI GATC 6 cut(s) 35, 39, 411, 564, 1116, 1139
MbiI CCGCTC 1 cut(s) 152
MboI GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
MboII GAAGA 8 cut(s) 339, 426, 488, 620, 731, 974, 993, 1052
MfeI CAATTG 1 cut(s) 779
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 7 cut(s) 268, 438, 693, 779, 1177, 1224, 1237
MlyI GAGTC 4 cut(s) 87, 414, 698, 848
MroXI GAANNNNTTC 3 cut(s) 251, 910, 1057
MseI TTAA 5 cut(s) 641, 731, 1013, 1049, 1149
MspA1I CMGCKG 2 cut(s) 10, 200
MspI CCGG 7 cut(s) 26, 56, 110, 265, 363, 384, 1030
MspR9I CCNGG 3 cut(s) 47, 56, 384
MunI CAATTG 1 cut(s) 779
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 3 cut(s) 101, 200, 210
MwoI GCNNNNNNNGC 2 cut(s) 194, 551
NciI CCSGG 2 cut(s) 56, 384
NdeII GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
NlaIII CATG 6 cut(s) 360, 537, 755, 892, 1127, 1144
NlaIV GGNNCC 3 cut(s) 44, 108, 172
NmeAIII GCCGAG 2 cut(s) 165, 261
NmuCI GTSAC 3 cut(s) 58, 77, 401
NspI RCATGY 2 cut(s) 755, 1127
NspV TTCGAA 2 cut(s) 115, 245
PaeI GCATGC 1 cut(s) 1127
PagI TCATGA 1 cut(s) 1140
PciI ACATGT 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 744
PdmI GAANNNNTTC 3 cut(s) 251, 910, 1057
PfeI GAWTC 5 cut(s) 176, 242, 371, 911, 1100
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 7 cut(s) 17, 103, 199, 202, 532, 556, 720
Ple19I CGATCG 2 cut(s) 36, 40
PleI GAGTC 4 cut(s) 87, 414, 697, 847
PpsI GAGTC 4 cut(s) 87, 414, 697, 847
PscI ACATGT 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 580
Psp1406I AACGTT 1 cut(s) 1089
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 44, 108, 172
PspPI GGNCC 3 cut(s) 43, 171, 360
PsuI RGATCY 1 cut(s) 562
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 2 cut(s) 36, 40
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacII CCGCGG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 641, 731, 1013, 1049, 1149
SatI GCNGC 7 cut(s) 16, 102, 198, 201, 531, 555, 719
Sau3AI GATC 6 cut(s) 33, 37, 409, 562, 1114, 1137
Sau96I GGNCC 3 cut(s) 43, 171, 360
SchI GAGTC 4 cut(s) 87, 414, 698, 848
ScrFI CCNGG 3 cut(s) 47, 56, 384
SduI GDGCHC 1 cut(s) 384
SfaNI GCATC 4 cut(s) 907, 997, 1031, 1033
SfcI CTRYAG 2 cut(s) 810, 847
Sfr303I CCGCGG 1 cut(s) 201
SfuI TTCGAA 2 cut(s) 115, 245
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 3 cut(s) 43, 171, 360
SphI GCATGC 1 cut(s) 1127
Sse9I AATT 7 cut(s) 268, 438, 693, 779, 1177, 1224, 1237
SsiI CCGC 8 cut(s) 8, 101, 104, 150, 167, 195, 198, 200
SspMI CTAG 2 cut(s) 368, 516
StyD4I CCNGG 3 cut(s) 45, 54, 382
TaaI ACNGT 5 cut(s) 407, 814, 848, 1147, 1245
TaiI ACGT 2 cut(s) 123, 1092
TaqI TCGA 7 cut(s) 32, 36, 96, 115, 134, 245, 309
TaqII GACCGA 1 cut(s) 188
TasI AATT 7 cut(s) 268, 438, 693, 779, 1177, 1224, 1237
TatI WGTACW 1 cut(s) 274
TauI GCSGC 3 cut(s) 104, 200, 203
TfiI GAWTC 5 cut(s) 176, 242, 371, 911, 1100
Tru1I TTAA 5 cut(s) 641, 731, 1013, 1049, 1149
Tru9I TTAA 5 cut(s) 641, 731, 1013, 1049, 1149
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 3 cut(s) 58, 77, 401
TseI GCWGC 4 cut(s) 15, 530, 554, 718
Tsp45I GTSAC 3 cut(s) 58, 77, 401
TspDTI ATGAA 5 cut(s) 17, 345, 942, 975, 981
TspGWI ACGGA 2 cut(s) 874, 1183
TspRI CASTG 1 cut(s) 907
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 3 cut(s) 43, 171, 360
XapI RAATTY 1 cut(s) 268
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 2 cut(s) 755, 1127
XmnI GAANNNNTTC 3 cut(s) 251, 910, 1057
XspI CTAG 2 cut(s) 368, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.