Rh7DG347400

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017653
Physical Location & Seq
Forward (+)
45985580 .. 45986837
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG347400.1

Sequence Viewer

Length: 591 bp
ATGAGCCCGGCCAGAGAGAAAGGCGTGACGGTGATCGGAGAGGACTCGTTGAGGTATATGAAGAAGGCTAATTGGAATAGAAATCGGCTTGGCTTGCCGGCGAGGAGGCCGTGCAAGCCTTTCGGCGAAGTGCATTTGAAGGTCTCTTCAATTCGTGCCAGCAAATCAGATGATAAAAGGCTTTCCATATTCACAGGAACTAAAACTCTTCACTTGTGTTGTTTATCTAGAGAGGACAGAGCTGCATGGATTGAGGCATTGCTGGCTGCTAAAGATCTTTTCCCCAGAGTTTTGTCAAGCAATGATTTAGTGCCTTCAGAAGATATAGTTGTTTCAACAGAGAAGTTACGAGTAAGATTGGCACAGGAGGGAGTTGGTGAGCCAGTTATCAAAGACTGCGAGTCAATTATGCTTTTAGAAGTCTCAGAGCTGCAAAACCAGTTAAAGGCTCTTCAGAGTAAACATGTTATGTTGTTAGACACATTGAGACAATTGGAGACAGAGAAAATAGAGCTGGAAACTACAGTAGTGGACGAAACAAAGGAGCGCGAGTCATACTGCAGTCAGGGCAATAGGAGACATAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

196

Amino Acids

22.16

Weight (kDa)

8.59

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_11 PF15413 7 - 88 7e-07 Pleckstrin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25220 FvH4_4g25220 FvH4_4g25220
rosa_chinensis RchiOBHm_Chr6g0262621 RchiOBHm_Chr7g0222411
rosa_multiflora Rmu_co8309101.1_g000001
rosa_samantha Rh4AG314000 Rh4CG336900 Rh7AG350400 Rh7CG367900 Rh7DG347400
rosa_wichuraiana Rw7G029940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 549
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 300, 437
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 3 cut(s) 139, 150, 336
AhdI GACNNNNNGTC 1 cut(s) 400
AluBI AGCT 3 cut(s) 242, 430, 514
AluI AGCT 3 cut(s) 242, 430, 514
Alw26I GTCTC 5 cut(s) 148, 427, 481, 491, 571
AoxI GGCC 2 cut(s) 9, 107
ApeKI GCWGC 3 cut(s) 242, 266, 430
AspLEI GCGC 1 cut(s) 549
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 43, 389
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 229, 253, 417
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 5 cut(s) 148, 427, 481, 491, 571
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 522, 559
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 243, 267, 431
BlsI GCNGC 3 cut(s) 244, 268, 432
Bme1390I CCNGG 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 148
BsaXI ACNNNNNCTCC 3 cut(s) 536, 566, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 383, 439
Bse3DI GCAATG 2 cut(s) 257, 307
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 2 cut(s) 257, 307
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 383, 439
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 3 cut(s) 229, 253, 417
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 2 cut(s) 11, 109
BsiSI CCGG 2 cut(s) 8, 98
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 5 cut(s) 148, 427, 481, 491, 571
BsnI GGCC 2 cut(s) 11, 109
Bso31I GGTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 33, 274
BspANI GGCC 2 cut(s) 11, 109
BspCNI CTCAG 1 cut(s) 437
BspFNI CGCG 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 563
BspQI GCTCTTC 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 257, 307
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 2 cut(s) 383, 439
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 2 cut(s) 33, 274
Bst4CI ACNGT 2 cut(s) 31, 526
Bst6I CTCTTC 3 cut(s) 151, 213, 456
BstC8I GCNNGC 5 cut(s) 95, 99, 116, 160, 264
BstDEI CTNAG 1 cut(s) 424
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 2 cut(s) 36, 277
BstMAI GTCTC 5 cut(s) 148, 427, 481, 491, 571
BstMBI GATC 2 cut(s) 33, 274
BstMWI GCNNNNNNNGC 4 cut(s) 94, 115, 263, 567
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 2 cut(s) 522, 559
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 229, 253, 417
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 2 cut(s) 11, 109
Cac8I GCNNGC 5 cut(s) 95, 99, 116, 160, 264
CfoI GCGC 1 cut(s) 549
Cfr10I RCCGGY 1 cut(s) 97
CviAII CATG 2 cut(s) 246, 464
DdeI CTNAG 1 cut(s) 424
DpnI GATC 2 cut(s) 35, 276
DpnII GATC 2 cut(s) 33, 274
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 151, 213, 456
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 3 cut(s) 151, 213, 456
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 300, 437
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 249, 467
FatI CATG 2 cut(s) 245, 463
Fnu4HI GCNGC 3 cut(s) 243, 267, 431
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 243, 267, 431
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 548
GluI GCNGC 3 cut(s) 243, 267, 431
HaeIII GGCC 2 cut(s) 11, 109
HapII CCGG 2 cut(s) 8, 98
HhaI GCGC 1 cut(s) 549
Hin1II CATG 2 cut(s) 249, 467
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HinfI GANTC 3 cut(s) 44, 401, 551
HpaII CCGG 2 cut(s) 8, 98
HphI GGTGA 2 cut(s) 43, 389
Hpy166II GTNNAC 2 cut(s) 461, 532
Hpy188I TCNGA 5 cut(s) 38, 169, 319, 427, 456
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 2 cut(s) 461, 532
HpyAV CCTTC 3 cut(s) 58, 133, 324
HpyCH4III ACNGT 2 cut(s) 31, 526
HpyCH4V TGCA 5 cut(s) 114, 133, 245, 433, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 115, 263, 567
HpyF3I CTNAG 1 cut(s) 424
Hsp92II CATG 2 cut(s) 249, 467
HspAI GCGC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 33, 274
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 3 cut(s) 229, 253, 417
MaeI CTAG 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 25, 345
MalI GATC 2 cut(s) 35, 276
MboI GATC 2 cut(s) 33, 274
MboII GAAGA 5 cut(s) 73, 138, 200, 332, 443
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 70, 150, 405, 491
MlyI GAGTC 3 cut(s) 38, 410, 560
MnlI CCTC 7 cut(s) 34, 45, 96, 99, 226, 247, 361
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 443
MspI CCGG 2 cut(s) 8, 98
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 491
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 4 cut(s) 94, 115, 263, 567
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 33, 274
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 249, 467
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 467
PciI ACATGT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 456
PdiI GCCGGC 1 cut(s) 99
PkrI GCNGC 3 cut(s) 244, 268, 432
PleI GAGTC 3 cut(s) 38, 409, 559
PpsI GAGTC 3 cut(s) 38, 409, 559
PscI ACATGT 1 cut(s) 463
PstI CTGCAG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 3 cut(s) 243, 267, 431
Sau3AI GATC 2 cut(s) 33, 274
SchI GAGTC 3 cut(s) 38, 410, 560
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 56, 144, 244, 432, 516
SfcI CTRYAG 2 cut(s) 522, 559
Sse9I AATT 4 cut(s) 70, 150, 405, 491
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 31, 526
TasI AATT 4 cut(s) 70, 150, 405, 491
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 242, 266, 430
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 467
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.