RchiOBHm_Chr6g0278641

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019280
Physical Location & Seq
Reverse (-)
41724933 .. 41725453
521 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGAGCCAGTTGGTGTTCCGGATCCAAATTCCTACAGCTACTGCTTCTGTAGATACAATTGGTGTTCCAAGGGAATGCTTACTGTTGAGAAATATGTTTGATCCCAAAGAAATTGAGGCTAAACCAGATATTGACATAATGTCCAAGGAAGATGTTCAGGAGGAATGTTCAAAATGCGGGAAGCTGAAACATATATTTGTTGACAAGAATACTGCTGGTTTTGTGTACTTGAGATTTGAGAACACACAAGCTGCAATACGTGCTCGACAAGTTCTCCATGGAAGATGGTTTGCTGGGAAGAAGATCACAGCCACTTTCATAGCAATTACATGTTATCACGGCTGTTAA

Protein Analysis

115

Amino Acids

13.04

Weight (kDa)

8.65

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 47 - 103 6.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019280)

Species Orthologous Gene IDs
malus_domestica MD01G1009800.v1.1
rosa_chinensis RchiOBHm_Chr6g0278641
rosa_laevigata RLG00000013204 RLG00000013209
rosa_multiflora Rmu_ssc0000144.1_g000015
rosa_rugosa Rorug06G0118300
rosa_samantha Rh6BG232200 Rh6CG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 1 cut(s) 177
AclWI GGATC 3 cut(s) 16, 29, 95
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 1 cut(s) 171
AhdI GACNNNNNGTC 1 cut(s) 139
AluBI AGCT 3 cut(s) 38, 184, 251
AluI AGCT 3 cut(s) 38, 184, 251
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 3 cut(s) 16, 29, 95
AlwNI CAGNNNCTG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 153
BamHI GGATCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 279
BfmI CTRYAG 2 cut(s) 33, 48
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 68, 144, 277
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bse1I ACTGG 1 cut(s) 7
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 68, 144, 277
BseNI ACTGG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 19
BsmI GAATGC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 3 cut(s) 21, 100, 303
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 3 cut(s) 16, 29, 95
BsrI ACTGG 1 cut(s) 7
BssECI CCNNGG 3 cut(s) 68, 144, 277
BssMI GATC 3 cut(s) 21, 100, 303
BssT1I CCWWGG 3 cut(s) 68, 144, 277
Bst4CI ACNGT 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 277
BstKTI GATC 3 cut(s) 24, 103, 306
BstMBI GATC 3 cut(s) 21, 100, 303
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 333
BstSFI CTRYAG 2 cut(s) 33, 48
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 41
Csp6I GTAC 1 cut(s) 226
CviAII CATG 2 cut(s) 278, 330
CviJI RGCY 7 cut(s) 6, 38, 119, 184, 251, 311, 342
CviKI_1 RGCY 7 cut(s) 6, 38, 119, 184, 251, 311, 342
CviQI GTAC 1 cut(s) 226
DpnI GATC 3 cut(s) 23, 102, 305
DpnII GATC 3 cut(s) 21, 100, 303
DriI GACNNNNNGTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 68, 144, 277
EcoT14I CCWWGG 3 cut(s) 68, 144, 277
ErhI CCWWGG 3 cut(s) 68, 144, 277
FaeI CATG 2 cut(s) 281, 333
FaiI YATR 7 cut(s) 95, 137, 192, 194, 279, 320, 331
FatI CATG 2 cut(s) 277, 329
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 297
HapII CCGG 1 cut(s) 19
Hin1II CATG 2 cut(s) 281, 333
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 202, 226
Hpy188III TCNNGA 2 cut(s) 19, 158
Hpy8I GTNNAC 2 cut(s) 202, 226
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 2 cut(s) 281, 333
Kpn2I TCCGGA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 21, 100, 303
LpnPI CCDG 6 cut(s) 20, 32, 138, 143, 201, 279
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 259
MalI GATC 3 cut(s) 23, 102, 305
MboI GATC 3 cut(s) 21, 100, 303
MboII GAAGA 4 cut(s) 161, 294, 310, 313
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 4 cut(s) 27, 57, 111, 324
MnlI CCTC 2 cut(s) 109, 154
MroI TCCGGA 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 346
MspI CCGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 277
NdeII GATC 3 cut(s) 21, 100, 303
NlaIII CATG 2 cut(s) 281, 333
NlaIV GGNNCC 1 cut(s) 23
NspI RCATGY 1 cut(s) 333
PciI ACATGT 1 cut(s) 329
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 260
PscI ACATGT 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 21, 100, 303
SduI GDGCHC 1 cut(s) 265
SetI ASST 4 cut(s) 40, 186, 253, 262
SfcI CTRYAG 2 cut(s) 33, 48
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 4 cut(s) 27, 57, 111, 324
SsiI CCGC 1 cut(s) 177
StyI CCWWGG 3 cut(s) 68, 144, 277
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 265
TasI AATT 4 cut(s) 27, 57, 111, 324
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 307
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.