RchiOBHm_Chr6g0278951

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019026
Physical Location & Seq
Forward (+)
42097783 .. 42099008
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGATTATGAAGACTATAGGAGGTCTCTTTATGGTGAAATCACTCACAAGACTGCTTGTTAATGCTGTTGGCACCCTTATTTTTCCTTCTCAGCCAATGGTTCAGATAGATGATCTGGAAGGTGCCAAGAGGGCAGGCGACCTCTTTGACTATCCTATAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGTGAGCATGATCTTTCTTCTACTGTAACAGTAGAACCTATTGCCCTTCTTTTACTCTCTAAGTTTGTTGCGGCTCTTGGAGGGTTTGATCGTGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCCGTCATTGTTGCTAGAGGAAGAGACAATTCTATCGTGTGCTATCTTGTTGTTGAAACTATACACAAGGAAAACATTTGTGACATTGTATCTTTAACTATAATCAGCTCTTCACTCTCCGACCGCCACCACCAGTCCCCCAAGACACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

7.79

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 29 - 147 5.2e-21 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 71, 122
AciI CCGC 2 cut(s) 284, 472
AcoI YGGCCR 1 cut(s) 348
AgsI TTSAA 1 cut(s) 404
AluBI AGCT 3 cut(s) 182, 346, 456
AluI AGCT 3 cut(s) 182, 346, 456
Alw26I GTCTC 2 cut(s) 29, 366
AoxI GGCC 2 cut(s) 327, 348
ApaI GGGCCC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 327, 328
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 331
BanI GGYRCC 2 cut(s) 71, 122
BanII GRGCYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 29, 366
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 327, 328
BmiI GGNNCC 4 cut(s) 73, 124, 329, 330
BpiI GAAGAC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 481
BseSI GKGCMC 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 472
BshFI GGCC 2 cut(s) 329, 350
BshNI GGYRCC 2 cut(s) 71, 122
BsiEI CGRYCG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 29, 366
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 2 cut(s) 329, 350
Bso31I GGTCTC 1 cut(s) 29
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 112, 223, 301
BspACI CCGC 2 cut(s) 284, 472
BspANI GGCC 2 cut(s) 329, 350
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 4 cut(s) 73, 124, 329, 330
BspQI GCTCTTC 1 cut(s) 463
BspT107I GGYRCC 2 cut(s) 71, 122
BspTNI GGTCTC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 481
BssMI GATC 3 cut(s) 112, 223, 301
Bst4CI ACNGT 2 cut(s) 238, 244
Bst6I CTCTTC 2 cut(s) 364, 463
BstC8I GCNNGC 2 cut(s) 136, 348
BstDEI CTNAG 3 cut(s) 90, 210, 273
BstKTI GATC 3 cut(s) 115, 226, 304
BstMAI GTCTC 2 cut(s) 29, 366
BstMBI GATC 3 cut(s) 112, 223, 301
BstMCI CGRYCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 329, 350
Cac8I GCNNGC 2 cut(s) 136, 348
Cfr13I GGNCC 2 cut(s) 327, 328
CviAII CATG 1 cut(s) 221
CviJI RGCY 7 cut(s) 94, 182, 287, 329, 346, 350, 456
CviKI_1 RGCY 7 cut(s) 94, 182, 287, 329, 346, 350, 456
DdeI CTNAG 3 cut(s) 90, 210, 273
DpnI GATC 3 cut(s) 114, 225, 303
DpnII GATC 3 cut(s) 112, 223, 301
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 364, 463
EarI CTCTTC 2 cut(s) 364, 463
Eco24I GRGCYC 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 1 cut(s) 224
FaiI YATR 9 cut(s) 8, 17, 32, 158, 186, 222, 315, 410, 449
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 1 cut(s) 469
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 329, 350
Hin1II CATG 1 cut(s) 224
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 105, 469
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 96, 113, 269
HpyCH4III ACNGT 2 cut(s) 238, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 90, 210, 273
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 3 cut(s) 112, 223, 301
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 4 cut(s) 101, 120, 332, 494
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 238, 428
MalI GATC 3 cut(s) 114, 225, 303
MboI GATC 3 cut(s) 112, 223, 301
MboII GAAGA 4 cut(s) 22, 222, 381, 450
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 5 cut(s) 14, 123, 152, 287, 359
MseI TTAA 2 cut(s) 60, 443
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 112, 223, 301
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 4 cut(s) 73, 124, 329, 330
NmuCI GTSAC 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 286
PspN4I GGNNCC 4 cut(s) 73, 124, 329, 330
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 327, 328
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 2 cut(s) 60, 443
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 3 cut(s) 112, 223, 301
Sau96I GGNCC 2 cut(s) 327, 328
SduI GDGCHC 1 cut(s) 331
SetI ASST 7 cut(s) 25, 124, 144, 184, 253, 348, 458
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 1 cut(s) 376
SsiI CCGC 2 cut(s) 284, 472
SspMI CTAG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 238, 244
TasI AATT 1 cut(s) 376
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 60, 443
Tru9I TTAA 2 cut(s) 60, 443
TseFI GTSAC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 23
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.