Rh4BG111200

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0019026
Physical Location & Seq
Reverse (-)
18783180 .. 18784992
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG111200.1

Sequence Viewer

Length: 369 bp
ATGAGAGTTGGTGATGCAACTGGTACATGGAACCAAAGTACATTACTTCTCAAGATAGATGATCTTGAAGGTGCCAAGAGGGCAGGCGACCTCTTTGACTATCCTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGGGAGCATGATCTTTCTTCTACTGTAACAGCTCTTGGAGGGTTTGATCGCGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCCGTCATTGTTGCTAGAGGAAGAGACAATTCTATCGTGTGCTATCCTGTTGTTGAAACTATACACAAGGAAAACATTTGTCACATTGTATCTTTATCTCCCCTCACAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

6.82

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 18 - 115 3.5e-27 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 2 cut(s) 25, 40
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 68, 311
AluBI AGCT 3 cut(s) 131, 194, 253
AluI AGCT 3 cut(s) 131, 194, 253
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 2 cut(s) 234, 255
ApaI GGGCCC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 234, 235
AsuHPI GGTGA 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 238
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 4 cut(s) 32, 73, 236, 237
BmsI GCATC 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 236, 257
BshNI GGYRCC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 236, 257
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 61, 172, 208
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 236, 257
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 32, 73, 236, 237
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 25
BssMI GATC 3 cut(s) 61, 172, 208
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 85, 255
BstDEI CTNAG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 3 cut(s) 64, 175, 211
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 61, 172, 208
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 236, 257
Cac8I GCNNGC 2 cut(s) 85, 255
Cfr13I GGNCC 2 cut(s) 234, 235
Csp6I GTAC 2 cut(s) 24, 39
CviAII CATG 2 cut(s) 27, 170
CviJI RGCY 5 cut(s) 131, 194, 236, 253, 257
CviKI_1 RGCY 5 cut(s) 131, 194, 236, 253, 257
CviQI GTAC 2 cut(s) 24, 39
DdeI CTNAG 1 cut(s) 159
DpnI GATC 3 cut(s) 63, 174, 210
DpnII GATC 3 cut(s) 61, 172, 208
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 2 cut(s) 30, 173
FaiI YATR 5 cut(s) 28, 135, 171, 222, 317
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 2 cut(s) 26, 169
FriOI GRGCYC 1 cut(s) 238
FspBI CTAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 236, 257
Hin1II CATG 2 cut(s) 30, 173
HphI GGTGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 52, 65
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 30, 173
Kzo9I GATC 3 cut(s) 61, 172, 208
LmnI GCTCC 2 cut(s) 166, 250
LpnPI CCDG 5 cut(s) 6, 69, 239, 315, 348
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 187, 335
MalI GATC 3 cut(s) 63, 174, 210
MboI GATC 3 cut(s) 61, 172, 208
MboII GAAGA 2 cut(s) 171, 288
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 283
MnlI CCTC 7 cut(s) 72, 101, 114, 156, 194, 266, 368
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 61, 172, 208
NlaIII CATG 2 cut(s) 30, 173
NlaIV GGNNCC 4 cut(s) 32, 73, 236, 237
NmuCI GTSAC 1 cut(s) 335
PspN4I GGNNCC 4 cut(s) 32, 73, 236, 237
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
RsaI GTAC 2 cut(s) 25, 40
RsaNI GTAC 2 cut(s) 24, 39
Sau3AI GATC 3 cut(s) 61, 172, 208
Sau96I GGNCC 2 cut(s) 234, 235
SduI GDGCHC 1 cut(s) 238
SetI ASST 6 cut(s) 73, 93, 133, 196, 255, 367
SfaNI GCATC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 187
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 38
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.