Rmu_sc0007904.1_g000036

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007904.1
OG0019026
Physical Location & Seq
Reverse (-)
138303 .. 141394
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007904.1_g000036.1.cds

Sequence Viewer

Length: 768 bp
atgaatgacaattcttattcgtcgtttgctgctgcgattgggtcgatagggggagtgaaagattttgaagactataggaggtctctttatggtgaaatcactcacaagactctgcttgttaatgctgttggcacccttatttttccttctcagccaatggttcagatagataatctggaaggtgccaagagggcaggcgacctctttgactatcctctaatgataaagagtaaaagattagcttatgatgggcatggaaatgatgttgctaagagtgagcatgatctttcttctactgtaacagaagtagaacctattgcccttcttttactctctaagtttgttgcagctcttggagggtttgatcgaggtttgtatgttgagaaatgggccccttttgtaaaggggttcagcgttcattctccttgctccctacggtcgcgttcaaatatggcttgccactcaaaccagttgccaatagccataactgctaggcactgttgccagctcaaatctccctcagcggcacttcttccgctaagattcatcggcggagccgccaagcttcctccgctagcctggcttggccgagttccaattttattttatgaactgtacatcgccggactatacagcgctgaccccaagctcctcggtagcggcagctgcaaaattccagtccagtcctttgctaactctcccctgcacaccaaatcctcagctacctacaacactgctaggatacaccagcggcaaaacctccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

255

Amino Acids

27.81

Weight (kDa)

9.27

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 131, 182
AccII CGCG 1 cut(s) 442
AciI CCGC 8 cut(s) 524, 536, 552, 558, 572, 660, 751, 763
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 672
AfaI GTAC 1 cut(s) 617
AfeI AGCGCT 1 cut(s) 637
AgsI TTSAA 2 cut(s) 68, 447
AjnI CCWGG 1 cut(s) 578
AluBI AGCT 7 cut(s) 242, 350, 508, 565, 649, 666, 722
AluI AGCT 7 cut(s) 242, 350, 508, 565, 649, 666, 722
Alw26I GTCTC 1 cut(s) 87
Aor51HI AGCGCT 1 cut(s) 637
AoxI GGCC 2 cut(s) 390, 586
ApaI GGGCCC 1 cut(s) 394
ApeKI GCWGC 5 cut(s) 29, 32, 347, 663, 666
ApoI RAATTY 1 cut(s) 672
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 2 cut(s) 390, 391
AsuHPI GGTGA 1 cut(s) 104
AsuNHI GCTAGC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 394
BanI GGYRCC 2 cut(s) 131, 182
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 75
BbvCI CCTCAGC 2 cut(s) 520, 718
BbvI GCAGC 5 cut(s) 16, 19, 359, 653, 675
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 580
BciVI GTATCC 1 cut(s) 735
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 4 cut(s) 492, 575, 738, 766
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 639
BfuI GTATCC 1 cut(s) 735
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 9 cut(s) 30, 33, 348, 525, 558, 661, 664, 667, 752
BlsI GCNGC 9 cut(s) 31, 34, 349, 526, 559, 662, 665, 668, 753
Bme1390I CCNGG 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 390, 391
BmiI GGNNCC 5 cut(s) 133, 184, 392, 393, 556
BmrFI CCNGG 1 cut(s) 580
BmtI GCTAGC 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 75
Bpu10I CCTNAGC 2 cut(s) 520, 718
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 652
Bse1I ACTGG 3 cut(s) 469, 677, 682
BseBI CCWGG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 652
BseMII CTCAG 3 cut(s) 164, 534, 732
BseNI ACTGG 3 cut(s) 469, 677, 682
BseRI GAGGAG 1 cut(s) 641
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 5 cut(s) 16, 19, 359, 653, 675
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 440
BshFI GGCC 2 cut(s) 392, 588
BshNI GGYRCC 2 cut(s) 131, 182
BsiEI CGRYCG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 624
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 2 cut(s) 392, 588
Bso31I GGTCTC 1 cut(s) 87
Bsp120I GGGCCC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 2 cut(s) 283, 364
BspACI CCGC 8 cut(s) 524, 536, 552, 558, 572, 660, 751, 763
BspANI GGCC 2 cut(s) 392, 588
BspCNI CTCAG 3 cut(s) 163, 533, 731
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 5 cut(s) 133, 184, 392, 393, 556
BspOI GCTAGC 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 131, 182
BspTNI GGTCTC 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 3 cut(s) 469, 677, 682
BssECI CCNNGG 1 cut(s) 652
BssMI GATC 2 cut(s) 283, 364
Bst2UI CCWGG 1 cut(s) 580
Bst4CI ACNGT 4 cut(s) 298, 438, 500, 615
BstAUI TGTACA 1 cut(s) 615
BstC8I GCNNGC 4 cut(s) 196, 457, 506, 576
BstDEI CTNAG 6 cut(s) 150, 270, 336, 520, 539, 718
BstFNI CGCG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 2 cut(s) 286, 367
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 283, 364
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 5 cut(s) 191, 488, 571, 580, 666
BstNI CCWGG 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 394
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 5 cut(s) 16, 19, 359, 653, 675
BstV2I GAAGAC 1 cut(s) 75
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 2 cut(s) 392, 588
BtgZI GCGATG 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 2 cut(s) 496, 732
Cac8I GCNNGC 4 cut(s) 196, 457, 506, 576
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 390, 391
Csp6I GTAC 1 cut(s) 616
CviAII CATG 2 cut(s) 254, 281
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 6 cut(s) 150, 270, 336, 520, 539, 718
DpnI GATC 2 cut(s) 285, 366
DpnII GATC 2 cut(s) 283, 364
EaeI YGGCCR 1 cut(s) 586
EciI GGCGGA 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 578
EcoT38I GRGCYC 1 cut(s) 394
FaeI CATG 2 cut(s) 257, 284
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 2 cut(s) 253, 280
Fnu4HI GCNGC 9 cut(s) 30, 33, 348, 525, 558, 661, 664, 667, 752
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 9 cut(s) 30, 33, 348, 525, 558, 661, 664, 667, 752
FspBI CTAG 4 cut(s) 492, 575, 738, 766
GlaI GCGC 1 cut(s) 637
GluI GCNGC 9 cut(s) 30, 33, 348, 525, 558, 661, 664, 667, 752
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 2 cut(s) 392, 588
HapII CCGG 1 cut(s) 624
HhaI GCGC 1 cut(s) 638
Hin1II CATG 2 cut(s) 257, 284
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 109, 543
HpaII CCGG 1 cut(s) 624
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 156, 173, 332
HpyCH4III ACNGT 4 cut(s) 298, 438, 500, 615
HpyCH4V TGCA 3 cut(s) 347, 669, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 488, 571, 580, 666
HpyF3I CTNAG 6 cut(s) 150, 270, 336, 520, 539, 718
Hsp92II CATG 2 cut(s) 257, 284
HspAI GCGC 1 cut(s) 636
Kzo9I GATC 2 cut(s) 283, 364
LmnI GCTCC 3 cut(s) 434, 554, 654
Lsp1109I GCAGC 5 cut(s) 16, 19, 359, 653, 675
MaeI CTAG 4 cut(s) 492, 575, 738, 766
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 285, 366
MboI GATC 2 cut(s) 283, 364
MboII GAAGA 3 cut(s) 80, 282, 524
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 3 cut(s) 10, 597, 672
MlyI GAGTC 1 cut(s) 103
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 3 cut(s) 524, 666, 751
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 580
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 5 cut(s) 191, 488, 571, 580, 666
NdeII GATC 2 cut(s) 283, 364
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 2 cut(s) 257, 284
NlaIV GGNNCC 5 cut(s) 133, 184, 392, 393, 556
NmeAIII GCCGAG 1 cut(s) 614
PfeI GAWTC 1 cut(s) 543
PkrI GCNGC 9 cut(s) 31, 34, 349, 526, 559, 662, 665, 668, 753
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 578
PspGI CCWGG 1 cut(s) 578
PspN4I GGNNCC 5 cut(s) 133, 184, 392, 393, 556
PspOMI GGGCCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 390, 391
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 9 cut(s) 30, 33, 348, 525, 558, 661, 664, 667, 752
Sau3AI GATC 2 cut(s) 283, 364
Sau96I GGNCC 2 cut(s) 390, 391
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 3 cut(s) 10, 597, 672
SsiI CCGC 8 cut(s) 524, 536, 552, 558, 572, 660, 751, 763
SspMI CTAG 4 cut(s) 492, 575, 738, 766
StyD4I CCNGG 1 cut(s) 578
TaaI ACNGT 4 cut(s) 298, 438, 500, 615
TaqI TCGA 2 cut(s) 44, 367
TasI AATT 3 cut(s) 10, 597, 672
TatI WGTACW 1 cut(s) 615
TauI GCSGC 4 cut(s) 527, 560, 663, 754
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 503, 739
TseI GCWGC 5 cut(s) 29, 32, 347, 663, 666
TspDTI ATGAA 4 cut(s) 17, 407, 535, 624
TspRI CASTG 2 cut(s) 503, 739
XapI RAATTY 1 cut(s) 672
XspI CTAG 4 cut(s) 492, 575, 738, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.