RchiOBHm_Chr7g0214531

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019026
Physical Location & Seq
Reverse (-)
31896007 .. 31897223
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19193

Sequence Viewer

Length: 552 bp
ATGTTGCAGGTATCAGTGTTAGTCTTTGTGTTGTATAACATTTTGGCTCAGTTTGTTTATATGAATTGGTATTGCATGAATGACAATTCTTATTCGTCGTTTACTGCTGCGATTGGGTTGATAGGGGGCGTGAAAGATCATGAAGACTATAGGAGGTCTCTTTATGGTGAAATCACTCACAAGACTCTGCTTGTTAATGCTATTGGCACCCTTATTTTTCCTTCTCAGCCAATGGTTCAGATAGATGATCTGGAAGGTGCCAAGAGGGCAGGCGACCTCTTTGACTATCGTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGTAAGCATGATCTTTCTTCTATTGTAACAGTAGAACCTATTGCCCTTCTTTTACTCTCTAAGTTTGTTGCAGCTCTTGGAGGGTTTGATCGCGGTTTATATGTTGAGAAATGGGCCCCTTTTGTAAAGCTGGCCGTCATTGTTGCTAGAGGAAGAGACAATTCTATCGTGTGCTATCCTGTTGTTGAAACTATACACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

183

Amino Acids

20.5

Weight (kDa)

8.46

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 74 - 183 1.1e-14 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 257
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 480
AgsI TTSAA 1 cut(s) 536
AluBI AGCT 3 cut(s) 317, 422, 478
AluI AGCT 3 cut(s) 317, 422, 478
Alw26I GTCTC 2 cut(s) 162, 498
AoxI GGCC 2 cut(s) 462, 480
ApaI GGGCCC 1 cut(s) 466
ApeKI GCWGC 2 cut(s) 107, 419
AspS9I GGNCC 2 cut(s) 462, 463
AsuHPI GGTGA 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 2 cut(s) 206, 257
BanII GRGCYC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 94, 431
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 467
BcoDI GTCTC 2 cut(s) 162, 498
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 2 cut(s) 108, 420
BlsI GCNGC 2 cut(s) 109, 421
BmgT120I GGNCC 2 cut(s) 462, 463
BmiI GGNNCC 4 cut(s) 208, 259, 464, 465
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 162
BseMII CTCAG 2 cut(s) 62, 239
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 2 cut(s) 94, 431
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 2 cut(s) 464, 482
BshNI GGYRCC 2 cut(s) 206, 257
BsmAI GTCTC 2 cut(s) 162, 498
BsnI GGCC 2 cut(s) 464, 482
Bso31I GGTCTC 1 cut(s) 162
Bsp120I GGGCCC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 4 cut(s) 136, 247, 358, 436
BspACI CCGC 1 cut(s) 441
BspANI GGCC 2 cut(s) 464, 482
BspCNI CTCAG 2 cut(s) 61, 238
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 208, 259, 464, 465
BspT107I GGYRCC 2 cut(s) 206, 257
BspTNI GGTCTC 1 cut(s) 162
BssMI GATC 4 cut(s) 136, 247, 358, 436
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 271, 480
BstDEI CTNAG 4 cut(s) 48, 225, 345, 408
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 4 cut(s) 139, 250, 361, 439
BstMAI GTCTC 2 cut(s) 162, 498
BstMBI GATC 4 cut(s) 136, 247, 358, 436
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstPAI GACNNNNGTC 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 94, 431
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 464, 482
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 271, 480
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 462, 463
CviAII CATG 3 cut(s) 76, 140, 356
CviJI RGCY 7 cut(s) 47, 229, 317, 422, 464, 478, 482
CviKI_1 RGCY 7 cut(s) 47, 229, 317, 422, 464, 478, 482
DdeI CTNAG 4 cut(s) 48, 225, 345, 408
DpnI GATC 4 cut(s) 138, 249, 360, 438
DpnII GATC 4 cut(s) 136, 247, 358, 436
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 3 cut(s) 79, 143, 359
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FatI CATG 3 cut(s) 75, 139, 355
Fnu4HI GCNGC 2 cut(s) 108, 420
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 2 cut(s) 108, 420
FspBI CTAG 1 cut(s) 495
GluI GCNGC 2 cut(s) 108, 420
HaeIII GGCC 2 cut(s) 464, 482
Hin1II CATG 3 cut(s) 79, 143, 359
HinfI GANTC 1 cut(s) 184
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 140, 251
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 231, 248, 404
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 7, 75, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 4 cut(s) 48, 225, 345, 408
Hsp92II CATG 3 cut(s) 79, 143, 359
Kzo9I GATC 4 cut(s) 136, 247, 358, 436
LpnPI CCDG 4 cut(s) 236, 255, 464, 540
Lsp1109I GCAGC 2 cut(s) 94, 431
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 373
MalI GATC 4 cut(s) 138, 249, 360, 438
MboI GATC 4 cut(s) 136, 247, 358, 436
MboII GAAGA 3 cut(s) 155, 357, 513
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 3 cut(s) 64, 85, 508
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 5 cut(s) 147, 258, 287, 422, 491
MseI TTAA 1 cut(s) 195
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 4 cut(s) 136, 247, 358, 436
NlaIII CATG 3 cut(s) 79, 143, 359
NlaIV GGNNCC 4 cut(s) 208, 259, 464, 465
PagI TCATGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 109, 421
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 208, 259, 464, 465
PspOMI GGGCCC 1 cut(s) 462
PspPI GGNCC 2 cut(s) 462, 463
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 108, 420
Sau3AI GATC 4 cut(s) 136, 247, 358, 436
Sau96I GGNCC 2 cut(s) 462, 463
SchI GAGTC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 466
SetI ASST 8 cut(s) 12, 158, 259, 279, 319, 388, 424, 480
SfcI CTRYAG 1 cut(s) 148
Sse9I AATT 3 cut(s) 64, 85, 508
SsiI CCGC 1 cut(s) 441
SspMI CTAG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 379
TasI AATT 3 cut(s) 64, 85, 508
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 21
TseI GCWGC 2 cut(s) 107, 419
TspDTI ATGAA 3 cut(s) 77, 92, 156
TspRI CASTG 1 cut(s) 21
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.