Rh7CG307800

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019026
Physical Location & Seq
Forward (+)
32341495 .. 32342726
1232 bp
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UTR
Exon/CDS
Intron
Rh7CG307800.1

Sequence Viewer

Length: 474 bp
ATGGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTATGGTGAAATCACTCACAAGACTCTGCTTGTTAATGCTGTTGGCACCCTTATTTTTCCTTCTCAGCCAATGGTTCAGATAGATGATCTGGAAGGTGCCAAGAGGGTAGGCGACCTCTTTGACTATCCTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGTGAGCATGATCTTTCTTCTACTGTAATAGCTCTTGGAGGGTTTGATCGCGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCCGTCATTGTTGCTAGAGGAAGAGACAATTCTATCGTGTGCTATCCTGTTGTTGAAACTATACACAAGGAAAACATTTGTGACATTGTATCTTTAACGATAATCAACTCTTCACTCTCCGACCGCCACCACCAGTCCCCCAAGACACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

157

Amino Acids

17.51

Weight (kDa)

6.19

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 34 - 138 1.2e-26 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 137
AccII CGCG 1 cut(s) 279
AciI CCGC 2 cut(s) 279, 445
AcoI YGGCCR 1 cut(s) 321
AgsI TTSAA 1 cut(s) 377
AluBI AGCT 3 cut(s) 197, 260, 319
AluI AGCT 3 cut(s) 197, 260, 319
Alw26I GTCTC 2 cut(s) 42, 339
AoxI GGCC 2 cut(s) 300, 321
ApaI GGGCCC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 300, 301
AsuHPI GGTGA 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 2 cut(s) 86, 137
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 30
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 42, 339
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 300, 301
BmiI GGNNCC 4 cut(s) 88, 139, 302, 303
BpiI GAAGAC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 302, 323
BshNI GGYRCC 2 cut(s) 86, 137
BsiEI CGRYCG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 42, 339
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 2 cut(s) 302, 323
Bso31I GGTCTC 1 cut(s) 42
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 127, 238, 274
BspACI CCGC 2 cut(s) 279, 445
BspANI GGCC 2 cut(s) 302, 323
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 88, 139, 302, 303
BspT107I GGYRCC 2 cut(s) 86, 137
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 454
BssMI GATC 3 cut(s) 127, 238, 274
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 337, 436
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 105, 225
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 3 cut(s) 130, 241, 277
BstMAI GTCTC 2 cut(s) 42, 339
BstMBI GATC 3 cut(s) 127, 238, 274
BstMCI CGRYCG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 302, 323
Cac8I GCNNGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 300, 301
CviAII CATG 1 cut(s) 236
CviJI RGCY 6 cut(s) 109, 197, 260, 302, 319, 323
CviKI_1 RGCY 6 cut(s) 109, 197, 260, 302, 319, 323
DdeI CTNAG 2 cut(s) 105, 225
DpnI GATC 3 cut(s) 129, 240, 276
DpnII GATC 3 cut(s) 127, 238, 274
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 337, 436
EarI CTCTTC 2 cut(s) 337, 436
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 1 cut(s) 239
FaiI YATR 7 cut(s) 21, 30, 45, 201, 237, 288, 383
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 304
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 302, 323
Hin1II CATG 1 cut(s) 239
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 120, 442
Hpy188III TCNNGA 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 111, 128
HpyCH4III ACNGT 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 105, 225
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 3 cut(s) 127, 238, 274
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 4 cut(s) 116, 305, 381, 467
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 401
MalI GATC 3 cut(s) 129, 240, 276
MboI GATC 3 cut(s) 127, 238, 274
MboII GAAGA 4 cut(s) 35, 237, 354, 423
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 6 cut(s) 27, 138, 167, 180, 260, 332
MseI TTAA 2 cut(s) 75, 416
MvnI CGCG 1 cut(s) 279
NdeII GATC 3 cut(s) 127, 238, 274
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 4 cut(s) 88, 139, 302, 303
NmuCI GTSAC 1 cut(s) 401
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 4 cut(s) 88, 139, 302, 303
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 300, 301
SaqAI TTAA 2 cut(s) 75, 416
Sau3AI GATC 3 cut(s) 127, 238, 274
Sau96I GGNCC 2 cut(s) 300, 301
SchI GAGTC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 304
SetI ASST 6 cut(s) 38, 139, 159, 199, 262, 321
SfcI CTRYAG 1 cut(s) 28
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 279, 445
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 253
TasI AATT 1 cut(s) 349
Tru1I TTAA 2 cut(s) 75, 416
Tru9I TTAA 2 cut(s) 75, 416
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 36
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.