Rh7DG291400

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019026
Physical Location & Seq
Forward (+)
32722122 .. 32756923
34802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG291400.1

Sequence Viewer

Length: 648 bp
ATGGATGTATCAGTGTTAGTCTTTGTGTTGTATAACATTTTGGCTCAGTTTGTTTATATGAATTGGTATTGCATGAATGACAATTCTTATTCGTCGTTTGCTGCTGCGATTGGGTCGATAGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTGTATGGTGAAATCACTCACAAGACTCTGCTTGTTAATGTTGTTGGCACCCTTATTTTTCCTTCTCAGCCAATGGTTCAGATAGATGATCTGGAAGGTGCCAAGAGGGCAGGCGACCTCTTTGACTATCCTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGTCAGCATGATCTTTCTTCTACTGTAACAGTAGAACCTATTGCCTTTCTTTTACTCTCTAAGTTTGTTGCAGCTCTTGGAGGGTTTGATCGCGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCAGTCATTGTTGCTAGAGGAAGAGACAATTCTATCATGTGCTATCCTGTTGTTGAAACTATACACAAGGAAAACATTTGTGACATTGTATCTTTAACTATAATCAGCTCTTCACTCTCCGACCGCCACCACCAGTCCCCCAAGACACCCTGGACTTCCCCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

215

Amino Acids

24.0

Weight (kDa)

5.93

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 74 - 191 8e-22 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 254
AccII CGCG 1 cut(s) 438
AciI CCGC 2 cut(s) 438, 604
AgsI TTSAA 1 cut(s) 536
AjnI CCWGG 1 cut(s) 629
AluBI AGCT 4 cut(s) 314, 419, 478, 588
AluI AGCT 4 cut(s) 314, 419, 478, 588
Alw26I GTCTC 2 cut(s) 159, 498
AoxI GGCC 1 cut(s) 459
ApaI GGGCCC 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 101, 104, 416
AspS9I GGNCC 2 cut(s) 459, 460
AsuHPI GGTGA 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 463
BanI GGYRCC 2 cut(s) 203, 254
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 88, 91, 428
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 159, 498
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 3 cut(s) 102, 105, 417
BlsI GCNGC 3 cut(s) 103, 106, 418
Bme1390I CCNGG 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 459, 460
BmiI GGNNCC 4 cut(s) 205, 256, 461, 462
BmrFI CCNGG 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 59, 236
BseNI ACTGG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 3 cut(s) 88, 91, 428
Bsh1236I CGCG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 1 cut(s) 461
BshNI GGYRCC 2 cut(s) 203, 254
BsiEI CGRYCG 1 cut(s) 604
BslFI GGGAC 1 cut(s) 601
BsmAI GTCTC 2 cut(s) 159, 498
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 461
Bso31I GGTCTC 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 3 cut(s) 244, 355, 433
BspACI CCGC 2 cut(s) 438, 604
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 2 cut(s) 58, 235
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 205, 256, 461, 462
BspQI GCTCTTC 1 cut(s) 595
BspT107I GGYRCC 2 cut(s) 203, 254
BspTNI GGTCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 3 cut(s) 244, 355, 433
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 370, 376
Bst6I CTCTTC 2 cut(s) 496, 595
BstC8I GCNNGC 2 cut(s) 268, 480
BstDEI CTNAG 4 cut(s) 45, 222, 342, 405
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 438
BstKTI GATC 3 cut(s) 247, 358, 436
BstMAI GTCTC 2 cut(s) 159, 498
BstMBI GATC 3 cut(s) 244, 355, 433
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 629
BstSFI CTRYAG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 3 cut(s) 88, 91, 428
BstV2I GAAGAC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 461
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 268, 480
Cfr13I GGNCC 2 cut(s) 459, 460
CviAII CATG 3 cut(s) 73, 353, 517
CviJI RGCY 7 cut(s) 44, 226, 314, 419, 461, 478, 588
CviKI_1 RGCY 7 cut(s) 44, 226, 314, 419, 461, 478, 588
DdeI CTNAG 4 cut(s) 45, 222, 342, 405
DpnI GATC 3 cut(s) 246, 357, 435
DpnII GATC 3 cut(s) 244, 355, 433
Eam1104I CTCTTC 2 cut(s) 496, 595
EarI CTCTTC 2 cut(s) 496, 595
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 463
FaeI CATG 3 cut(s) 76, 356, 520
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 601
FatI CATG 3 cut(s) 72, 352, 516
Fnu4HI GCNGC 3 cut(s) 102, 105, 417
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 102, 105, 417
FspBI CTAG 1 cut(s) 495
GluI GCNGC 3 cut(s) 102, 105, 417
HaeIII GGCC 1 cut(s) 461
Hin1II CATG 3 cut(s) 76, 356, 520
HinfI GANTC 2 cut(s) 181, 346
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 237, 601
Hpy188III TCNNGA 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 228, 245
HpyCH4III ACNGT 2 cut(s) 370, 376
HpyCH4V TGCA 2 cut(s) 72, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 45, 222, 342, 405
Hsp92II CATG 3 cut(s) 76, 356, 520
Kzo9I GATC 3 cut(s) 244, 355, 433
LguI GCTCTTC 1 cut(s) 595
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 7 cut(s) 233, 252, 464, 540, 616, 626, 643
Lsp1109I GCAGC 3 cut(s) 88, 91, 428
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 370, 560
MalI GATC 3 cut(s) 246, 357, 435
MboI GATC 3 cut(s) 244, 355, 433
MboII GAAGA 4 cut(s) 152, 354, 513, 582
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 3 cut(s) 61, 82, 508
MlyI GAGTC 2 cut(s) 175, 355
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 6 cut(s) 144, 255, 284, 297, 419, 491
MseI TTAA 2 cut(s) 192, 575
MspR9I CCNGG 1 cut(s) 631
MvaI CCWGG 1 cut(s) 631
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 3 cut(s) 244, 355, 433
NlaIII CATG 3 cut(s) 76, 356, 520
NlaIV GGNNCC 4 cut(s) 205, 256, 461, 462
NmuCI GTSAC 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 595
PkrI GCNGC 3 cut(s) 103, 106, 418
PleI GAGTC 2 cut(s) 175, 354
PpsI GAGTC 2 cut(s) 175, 354
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 4 cut(s) 205, 256, 461, 462
PspOMI GGGCCC 1 cut(s) 459
PspPI GGNCC 2 cut(s) 459, 460
SapI GCTCTTC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 192, 575
SatI GCNGC 3 cut(s) 102, 105, 417
Sau3AI GATC 3 cut(s) 244, 355, 433
Sau96I GGNCC 2 cut(s) 459, 460
SchI GAGTC 2 cut(s) 175, 355
ScrFI CCNGG 1 cut(s) 631
SduI GDGCHC 1 cut(s) 463
SetI ASST 8 cut(s) 155, 256, 276, 316, 385, 421, 480, 590
SfcI CTRYAG 1 cut(s) 145
Sse9I AATT 3 cut(s) 61, 82, 508
SsiI CCGC 2 cut(s) 438, 604
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 370, 376
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 61, 82, 508
Tru1I TTAA 2 cut(s) 192, 575
Tru9I TTAA 2 cut(s) 192, 575
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 3 cut(s) 101, 104, 416
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 74, 89, 153
TspRI CASTG 1 cut(s) 18
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.