Rh7AG288000

Phosphoribosylaminoimidazole carboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019026
Physical Location & Seq
Forward (+)
31010039 .. 31011409
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG288000.1

Sequence Viewer

Length: 480 bp
ATGAGACCCTTATCGACTCTATTGACAGTGCCTTTATTCTTCGATTTGTTTGACGGAGGAGGAGGAAGGACTTGTCATGGTGACCATGAAGGGGGCGTGAAAGATTATGAAGACTATAGGAGGTCTCTTTATGGTGAAATCACTCACAAGACTCTGCTTGTTAATGCTGTTGGCACCCTTATTTTTCCTTCTCAACCAATGGTTCAGATAGATGATCTGGAAGGTGCCAAGAGGGCAGGCGACCTCTTTGACTATCCTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGATGTTGCTAAGAGTGAGCATGATCTTTCTTCTACTGTAACAGCTCTTGGAGGGTTTGATCGCGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCCGTCATTGTTGCTAGAGGAAAAGACAATTCTATCGTGTGCTATCTTGTTGTTGAAACTATACACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 map00230 map01100 map01110
Pfam Domains
Protein Families
AIRC ATP-grasp

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

5.93

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-grasp PF02222 63 - 159 1.4e-22 ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 173, 224
AccII CGCG 1 cut(s) 366
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 464
AluBI AGCT 3 cut(s) 284, 347, 406
AluI AGCT 3 cut(s) 284, 347, 406
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 2 cut(s) 387, 408
ApaI GGGCCC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 387, 388
AsuHPI GGTGA 2 cut(s) 92, 146
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 2 cut(s) 173, 224
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 117
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 387, 388
BmiI GGNNCC 4 cut(s) 175, 226, 389, 390
BpiI GAAGAC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 72, 75
BseSI GKGCMC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 2 cut(s) 389, 410
BshNI GGYRCC 2 cut(s) 173, 224
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 389, 410
Bso31I GGTCTC 1 cut(s) 129
Bsp120I GGGCCC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 3 cut(s) 214, 325, 361
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 389, 410
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 175, 226, 389, 390
BspT107I GGYRCC 2 cut(s) 173, 224
BspTNI GGTCTC 1 cut(s) 129
BssMI GATC 3 cut(s) 214, 325, 361
Bst4CI ACNGT 2 cut(s) 28, 340
BstC8I GCNNGC 2 cut(s) 238, 408
BstDEI CTNAG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 80
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 3 cut(s) 217, 328, 364
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 214, 325, 361
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 389, 410
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 238, 408
Cfr13I GGNCC 2 cut(s) 387, 388
CviAII CATG 3 cut(s) 77, 86, 323
CviJI RGCY 5 cut(s) 284, 347, 389, 406, 410
CviKI_1 RGCY 5 cut(s) 284, 347, 389, 406, 410
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 216, 327, 363
DpnII GATC 3 cut(s) 214, 325, 361
EaeI YGGCCR 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 388
EcoO65I GGTNACC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 3 cut(s) 80, 89, 326
FaiI YATR 9 cut(s) 78, 87, 108, 117, 132, 288, 324, 375, 470
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 3 cut(s) 76, 85, 322
FriOI GRGCYC 1 cut(s) 391
FspBI CTAG 1 cut(s) 423
HaeIII GGCC 2 cut(s) 389, 410
Hin1II CATG 3 cut(s) 80, 89, 326
HinfI GANTC 2 cut(s) 16, 151
HphI GGTGA 2 cut(s) 92, 146
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 60, 83, 198, 215
HpyCH4III ACNGT 2 cut(s) 28, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 3 cut(s) 80, 89, 326
Kzo9I GATC 3 cut(s) 214, 325, 361
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 3 cut(s) 203, 222, 392
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 80, 340
MalI GATC 3 cut(s) 216, 327, 363
MboI GATC 3 cut(s) 214, 325, 361
MboII GAAGA 3 cut(s) 31, 122, 324
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 1 cut(s) 436
MlyI GAGTC 2 cut(s) 10, 145
MnlI CCTC 9 cut(s) 50, 53, 56, 114, 225, 254, 267, 347, 419
MseI TTAA 1 cut(s) 162
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 3 cut(s) 214, 325, 361
NlaIII CATG 3 cut(s) 80, 89, 326
NlaIV GGNNCC 4 cut(s) 175, 226, 389, 390
NmuCI GTSAC 1 cut(s) 80
PleI GAGTC 2 cut(s) 10, 145
PpsI GAGTC 2 cut(s) 10, 145
PspEI GGTNACC 1 cut(s) 80
PspN4I GGNNCC 4 cut(s) 175, 226, 389, 390
PspOMI GGGCCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 387, 388
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 3 cut(s) 214, 325, 361
Sau96I GGNCC 2 cut(s) 387, 388
SchI GAGTC 2 cut(s) 10, 145
SduI GDGCHC 1 cut(s) 391
SetI ASST 6 cut(s) 125, 226, 246, 286, 349, 408
SfcI CTRYAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 436
SsiI CCGC 1 cut(s) 366
SspMI CTAG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 28, 340
TaqI TCGA 2 cut(s) 14, 42
TasI AATT 1 cut(s) 436
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 102, 123
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 33
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.