Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018632

Physical Location & Seq

Genomic Coordinates Reverse (-)

54787357 .. 54788166

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGAAGGGATTGGGCATTTGCAGAACTTCAGAAGATCTTTGGAATGAGTATCTTCGAATAGAAACATTCCTAAATAAACTAAAGAATCAAAAGGTTGCTCTTCGAGAGGATGACCGTACTCACACAAGTGCTGATGAGAAACAGTGGAGAGACGAAAATAAAGATTTATACACGCTCCTTAATCAAGAAAGAGAATACAGTGAAGGGTCAGATGCTGATAATGAGAAGTCAATCAACACAGTTAATAAGTCTCAAGAGCAAGGTTTAAGCATATTAAGAACCATATACATTGAAGCAGTTAAAGCTCTTCCCTCTAGTTTTACTCTGAGAAAGCGGCTTTTGGAGATCTTGGAAGCAACTTCCTTTGTTAATTCAGAAGAAATACGTAAGAAAATACCAACTGACATGAAGCGAGACTTCCCAACAGAACCAGAGTATTGGGACTGGCTTGCAAGACTTGAATACAATCCTGCAAGCACACAGGAGATGAGTGAGGAAATCACACTTTCTCAGGTAGAAAAAGCAGTTCAGGTTTATGAGTTGGCTATTGAAGTTTTGCCTTCAGCCATAATATTCAACCAGTATGCAAAGTTTTTTATGCATGCCACTGCTCTACTAAAACGAGAAAACAACCTGTCTGGTTTAGCCAGTCCATCTGCAGCTCTACTAGTTATATTTCACGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

230

Amino Acids

26.69

Weight (kDa)

5.13

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018632)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0291751
rosa_laevigata	RLG00000012087
rosa_roxburghii	Rroxscaffold_7G00175780
rosa_rugosa	Rorug06G0221400
rosa_samantha	Rh6AG334000 Rh6BG341100 Rh6CG347200 Rh6DG334400 Rh6DG334500
rosa_wichuraiana	Rw6G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	15, 549
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	296, 464, 554, 580
AhlI	ACTAGT	1 cut(s)	670
AjiI	CACGTC	1 cut(s)	685
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	308, 665
AluI	AGCT	2 cut(s)	308, 665
Alw26I	GTCTC	3 cut(s)	147, 258, 411
AlwNI	CAGNNNCTG	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	662
AsuII	TTCGAA	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	1 cut(s)	664
BcoDI	GTCTC	3 cut(s)	147, 258, 411
BcuI	ACTAGT	1 cut(s)	670
BfaI	CTAG	2 cut(s)	318, 671
BfmI	CTRYAG	1 cut(s)	660
BglII	AGATCT	2 cut(s)	37, 348
BisI	GCNGC	2 cut(s)	338, 663
BlsI	GCNGC	2 cut(s)	339, 664
BmgBI	CACGTC	1 cut(s)	685
BmsI	GCATC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	389
Bse1I	ACTGG	3 cut(s)	452, 583, 651
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	320, 527
BseNI	ACTGG	3 cut(s)	452, 583, 651
BseXI	GCAGC	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	147, 258, 411
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	37, 348
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	321, 526
BspMAI	CTGCAG	1 cut(s)	664
BspQI	GCTCTTC	2 cut(s)	108, 315
BspT104I	TTCGAA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	452, 583, 651
BssMI	GATC	2 cut(s)	37, 348
Bst4CI	ACNGT	4 cut(s)	119, 147, 203, 244
Bst6I	CTCTTC	2 cut(s)	108, 315
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	453, 478, 606
BstDEI	CTNAG	2 cut(s)	329, 513
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	40, 351
BstMAI	GTCTC	3 cut(s)	147, 258, 411
BstMBI	GATC	2 cut(s)	37, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	608
BstSFI	CTRYAG	1 cut(s)	660
BstSNI	TACGTA	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	674
BstX2I	RGATCY	2 cut(s)	37, 348
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	2 cut(s)	37, 348
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	152, 208, 609
Cac8I	GCNNGC	3 cut(s)	453, 478, 606
CaiI	CAGNNNCTG	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	2 cut(s)	409, 605
CviJI	RGCY	7 cut(s)	308, 340, 451, 548, 569, 650, 665
CviKI_1	RGCY	7 cut(s)	308, 340, 451, 548, 569, 650, 665
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	329, 513
DpnI	GATC	2 cut(s)	39, 350
DpnII	GATC	2 cut(s)	37, 348
Eam1104I	CTCTTC	2 cut(s)	108, 315
EarI	CTCTTC	2 cut(s)	108, 315
Eco105I	TACGTA	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	15, 549
EcoT22I	ATGCAT	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	412, 608
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	408, 604
Fnu4HI	GCNGC	2 cut(s)	338, 663
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	338, 663
FspBI	CTAG	2 cut(s)	318, 671
GluI	GCNGC	2 cut(s)	338, 663
Hin1II	CATG	2 cut(s)	412, 608
HinfI	GANTC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	34, 214, 330, 379
Hpy188III	TCNNGA	3 cut(s)	107, 188, 257
HpyAV	CCTTC	2 cut(s)	200, 573
HpyCH4III	ACNGT	4 cut(s)	119, 147, 203, 244
HpyCH4IV	ACGT	2 cut(s)	388, 684
HpyCH4V	TGCA	6 cut(s)	24, 455, 476, 590, 604, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	329, 513
HpySE526I	ACGT	2 cut(s)	388, 684
Hsp92II	CATG	2 cut(s)	412, 608
Kzo9I	GATC	2 cut(s)	37, 348
LguI	GCTCTTC	2 cut(s)	108, 315
LmnI	GCTCC	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	318, 671
MaeII	ACGT	2 cut(s)	388, 684
MalI	GATC	2 cut(s)	39, 350
MboI	GATC	2 cut(s)	37, 348
MboII	GAAGA	5 cut(s)	47, 47, 95, 302, 392
MflI	RGATCY	2 cut(s)	37, 348
MluCI	AATT	1 cut(s)	373
MnlI	CCTC	3 cut(s)	103, 325, 490
Mph1103I	ATGCAT	1 cut(s)	606
MseI	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 691
MslI	CAYNNNNRTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	2 cut(s)	37, 348
NlaIII	CATG	2 cut(s)	412, 608
NsiI	ATGCAT	1 cut(s)	606
NspI	RCATGY	1 cut(s)	608
NspV	TTCGAA	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	608
PciSI	GCTCTTC	2 cut(s)	108, 315
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	339, 664
Ppu21I	YACGTR	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	37, 348
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	108, 315
SaqAI	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 691
SatI	GCNGC	2 cut(s)	338, 663
Sau3AI	GATC	2 cut(s)	37, 348
SetI	ASST	9 cut(s)	99, 268, 310, 391, 519, 537, 639, 667, 687
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SnaBI	TACGTA	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	670
SphI	GCATGC	1 cut(s)	608
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	337
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	318, 671
TaaI	ACNGT	4 cut(s)	119, 147, 203, 244
TaiI	ACGT	2 cut(s)	391, 687
TaqI	TCGA	2 cut(s)	58, 106
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 691
Tru9I	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 691
TscAI	CASTG	3 cut(s)	152, 208, 616
TseI	GCWGC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	20, 425
TspRI	CASTG	3 cut(s)	152, 208, 616
XceI	RCATGY	1 cut(s)	608
XspI	CTAG	2 cut(s)	318, 671
Zsp2I	ATGCAT	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.