U3 small nucleolar RNA-associated protein 6 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0291751 |
| rosa_laevigata | RLG00000012087 |
| rosa_roxburghii | Rroxscaffold_7G00175780 |
| rosa_rugosa | Rorug06G0221400 |
| rosa_samantha | Rh6AG334000 Rh6BG341100 Rh6CG347200 Rh6DG334400 Rh6DG334500 |
| rosa_wichuraiana | Rw6G029080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AgsI | TTSAA | 3 cut(s) | 80, 170, 196 |
| AhlI | ACTAGT | 1 cut(s) | 286 |
| AjiI | CACGTC | 1 cut(s) | 301 |
| AluBI | AGCT | 1 cut(s) | 281 |
| AluI | AGCT | 1 cut(s) | 281 |
| Alw26I | GTCTC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 1 cut(s) | 278 |
| BbvI | GCAGC | 1 cut(s) | 290 |
| BccI | CCATC | 1 cut(s) | 280 |
| BcoDI | GTCTC | 1 cut(s) | 3 |
| BcuI | ACTAGT | 1 cut(s) | 286 |
| BfaI | CTAG | 1 cut(s) | 287 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 1 cut(s) | 280 |
| BmgBI | CACGTC | 1 cut(s) | 301 |
| Bse1I | ACTGG | 4 cut(s) | 44, 68, 199, 267 |
| BseMII | CTCAG | 1 cut(s) | 143 |
| BseNI | ACTGG | 4 cut(s) | 44, 68, 199, 267 |
| BseXI | GCAGC | 1 cut(s) | 290 |
| BslFI | GGGAC | 2 cut(s) | 50, 74 |
| BsmAI | GTCTC | 1 cut(s) | 3 |
| BsmFI | GGGAC | 2 cut(s) | 50, 74 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BsrI | ACTGG | 4 cut(s) | 44, 68, 199, 267 |
| BstC8I | GCNNGC | 3 cut(s) | 69, 94, 222 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstMAI | GTCTC | 1 cut(s) | 3 |
| BstNSI | RCATGY | 1 cut(s) | 224 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 1 cut(s) | 290 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 33 |
| BtrI | CACGTC | 1 cut(s) | 301 |
| BtsI | GCAGTG | 1 cut(s) | 225 |
| BtsIMutI | CAGTG | 1 cut(s) | 225 |
| Cac8I | GCNNGC | 3 cut(s) | 69, 94, 222 |
| CviAII | CATG | 1 cut(s) | 221 |
| CviJI | RGCY | 6 cut(s) | 43, 67, 164, 185, 266, 281 |
| CviKI_1 | RGCY | 6 cut(s) | 43, 67, 164, 185, 266, 281 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| EcoT22I | ATGCAT | 1 cut(s) | 222 |
| FaeI | CATG | 1 cut(s) | 224 |
| FaiI | YATR | 6 cut(s) | 156, 188, 204, 218, 222, 293 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 28 |
| FaqI | GGGAC | 2 cut(s) | 50, 74 |
| FatI | CATG | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 1 cut(s) | 279 |
| FspBI | CTAG | 1 cut(s) | 287 |
| GluI | GCNGC | 1 cut(s) | 279 |
| Hin1II | CATG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 2 cut(s) | 135, 189 |
| HpyCH4IV | ACGT | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 5 cut(s) | 71, 92, 206, 220, 278 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| HpySE526I | ACGT | 1 cut(s) | 300 |
| Hsp92II | CATG | 1 cut(s) | 224 |
| Lsp1109I | GCAGC | 1 cut(s) | 290 |
| MaeI | CTAG | 1 cut(s) | 287 |
| MaeII | ACGT | 1 cut(s) | 300 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MnlI | CCTC | 1 cut(s) | 151 |
| Mph1103I | ATGCAT | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 307 |
| NlaIII | CATG | 1 cut(s) | 224 |
| NsiI | ATGCAT | 1 cut(s) | 222 |
| NspI | RCATGY | 1 cut(s) | 224 |
| PaeI | GCATGC | 1 cut(s) | 224 |
| PkrI | GCNGC | 1 cut(s) | 280 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| SaqAI | TTAA | 1 cut(s) | 307 |
| SatI | GCNGC | 1 cut(s) | 279 |
| SetI | ASST | 7 cut(s) | 127, 135, 153, 162, 255, 283, 303 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SpeI | ACTAGT | 1 cut(s) | 286 |
| SphI | GCATGC | 1 cut(s) | 224 |
| SspI | AATATT | 1 cut(s) | 192 |
| SspMI | CTAG | 1 cut(s) | 287 |
| TaiI | ACGT | 1 cut(s) | 303 |
| Tru1I | TTAA | 1 cut(s) | 307 |
| Tru9I | TTAA | 1 cut(s) | 307 |
| TscAI | CASTG | 1 cut(s) | 232 |
| TseI | GCWGC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 232 |
| XceI | RCATGY | 1 cut(s) | 224 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 54 |
| XspI | CTAG | 1 cut(s) | 287 |
| Zsp2I | ATGCAT | 1 cut(s) | 222 |