Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018632

Physical Location & Seq

Genomic Coordinates Forward (+)

15131295 .. 15132928

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGAAGGGATTGGGCATTTGCAGAACTTCAGAAGATCTTTGGAATGAGTATCTTCGAATGGAAACATTCCTAAATAAATTGAAGACTCAAAATGTTGCTCTTCGAGAGGATGACCGTGCTCACACAAGTGCTGATGAGAAACAGTGGAGAGACGAAAATAAAGATTTATACACGCTCCTTAATCAAGAAAGAGAATACAGTGAAGGGTCAGATGCTGAAAATGAGAAGTCAATCAACACAGTTATTAAGTTTCAAGAGCAAGGTTTGAGCATATTAAGAACCATATACATTGAAGCAGTTAAAGCTCTTCCCTCTAGTTTTACTCTGAGAAAGTGGCTTTTGAAGATCTTGGAACCAACTTCCTTTGTTAATTCAGAAGAAATATGTAAGAAGATGCCAAGTGACATGAAGCGAGACTTCCCAACAGAACCAGAGTATTGGGACTGGCTTGCAAGACTTGAATACAATCCTGCAAGCACACAGAAGATGAGTGAAGAAATCACACTTTCTCAGGTAGAAAAAGCAGTTCAGGCCCTCAAGTTCTTTGCTAATCAAAAACTTGTTTTTGTCGGCTTTATTGCTCTACCACACCCCTATAGGACCTGCATTGAGTTGGAATCAAACTTTGCATCCAACGGGGATAAAGACCGTCTTCAAAATACCCGAAAGTTATATGAATCTGCACTTACAAGTTACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

235

Amino Acids

27.39

Weight (kDa)

5.25

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018632)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0291751
rosa_laevigata	RLG00000012087
rosa_roxburghii	Rroxscaffold_7G00175780
rosa_rugosa	Rorug06G0221400
rosa_samantha	Rh6AG334000 Rh6BG341100 Rh6CG347200 Rh6DG334400 Rh6DG334500
rosa_wichuraiana	Rw6G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	15
AgsI	TTSAA	6 cut(s)	85, 257, 296, 346, 464, 659
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	147, 411
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	535, 603
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	603
BbsI	GAAGAC	2 cut(s)	92, 647
Bbv12I	GWGCWC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	147, 411
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	614
BglII	AGATCT	2 cut(s)	37, 348
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	535, 603
BmiI	GGNNCC	1 cut(s)	357
BmsI	GCATC	3 cut(s)	205, 387, 641
BpiI	GAAGAC	2 cut(s)	92, 647
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	118, 632
BseMII	CTCAG	2 cut(s)	320, 527
BseNI	ACTGG	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	147, 411
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	37, 348
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	321, 526
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	614
BspQI	GCTCTTC	2 cut(s)	108, 315
BspT104I	TTCGAA	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	452
BssMI	GATC	2 cut(s)	37, 348
Bst4CI	ACNGT	5 cut(s)	119, 147, 203, 244, 653
Bst6I	CTCTTC	2 cut(s)	108, 315
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	453, 478
BstDEI	CTNAG	2 cut(s)	329, 513
BstF5I	GGATG	2 cut(s)	118, 632
BstKTI	GATC	2 cut(s)	40, 351
BstMAI	GTCTC	2 cut(s)	147, 411
BstMBI	GATC	2 cut(s)	37, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 533
BstSFI	CTRYAG	1 cut(s)	598
BstV2I	GAAGAC	2 cut(s)	92, 647
BstX2I	RGATCY	2 cut(s)	37, 348
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	2 cut(s)	37, 348
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	118, 632
BtsIMutI	CAGTG	2 cut(s)	152, 208
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	453, 478
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	535, 603
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	5 cut(s)	308, 340, 451, 536, 576
CviKI_1	RGCY	5 cut(s)	308, 340, 451, 536, 576
DdeI	CTNAG	2 cut(s)	329, 513
DpnI	GATC	2 cut(s)	39, 350
DpnII	GATC	2 cut(s)	37, 348
Eam1104I	CTCTTC	2 cut(s)	108, 315
EarI	CTCTTC	2 cut(s)	108, 315
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	15
EcoO109I	RGGNCCY	2 cut(s)	535, 603
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	412
FaiI	YATR	9 cut(s)	172, 275, 287, 289, 388, 410, 600, 676, 678
FalI	AAGNNNNNCTT	4 cut(s)	404, 436, 639, 671
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	1 cut(s)	408
FokI	GGATG	2 cut(s)	125, 619
FspBI	CTAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	536
Hin1II	CATG	1 cut(s)	412
HinfI	GANTC	3 cut(s)	88, 620, 680
Hpy188I	TCNGA	4 cut(s)	34, 214, 330, 379
Hpy188III	TCNNGA	3 cut(s)	107, 188, 257
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	5 cut(s)	119, 147, 203, 244, 653
HpyCH4V	TGCA	6 cut(s)	24, 455, 476, 609, 632, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 533
HpyF3I	CTNAG	2 cut(s)	329, 513
Hsp92II	CATG	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	37, 348
LguI	GCTCTTC	2 cut(s)	108, 315
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	6 cut(s)	433, 447, 486, 500, 518, 619
LweI	GCATC	3 cut(s)	205, 387, 641
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	404, 695
MalI	GATC	2 cut(s)	39, 350
MboI	GATC	2 cut(s)	37, 348
MflI	RGATCY	2 cut(s)	37, 348
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	80, 373
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	597, 660
MnlI	CCTC	3 cut(s)	103, 325, 548
MseI	TTAA	5 cut(s)	183, 249, 278, 303, 372
MslI	CAYNNNNRTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	305, 533
NdeII	GATC	2 cut(s)	37, 348
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	129
PciSI	GCTCTTC	2 cut(s)	108, 315
PfeI	GAWTC	2 cut(s)	620, 680
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	535, 603
PspPPI	RGGWCCY	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	37, 348
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	108, 315
SaqAI	TTAA	5 cut(s)	183, 249, 278, 303, 372
Sau3AI	GATC	2 cut(s)	37, 348
Sau96I	GGNCC	2 cut(s)	535, 603
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	4 cut(s)	268, 310, 519, 608
SfaNI	GCATC	3 cut(s)	205, 387, 641
SfcI	CTRYAG	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	80, 373
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	119, 147, 203, 244, 653
TaqI	TCGA	2 cut(s)	58, 106
TasI	AATT	2 cut(s)	80, 373
TfiI	GAWTC	2 cut(s)	620, 680
Tru1I	TTAA	5 cut(s)	183, 249, 278, 303, 372
Tru9I	TTAA	5 cut(s)	183, 249, 278, 303, 372
TscAI	CASTG	2 cut(s)	152, 208
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	20, 425, 693
TspRI	CASTG	2 cut(s)	152, 208
VpaK11BI	GGWCC	1 cut(s)	603
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.