Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018632

Physical Location & Seq

Genomic Coordinates Reverse (-)

53502243 .. 53502791

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG334000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATGAAGGGATTGGGCATTTGCAGAACTTCAGAAAATCTTTCGAATGAGTATCTTCGAATAGAAACATTCCTAAATAAACTAAAGAATCAAAAGGTTGCTCTTCGAGAGGATCACCGTACTCACACAAGTGCTGATGAGAAACAGTGGAGAGACGAAAATAAAGATTTATACACGCTCTTTAATCAAGAAAGAGAATACAGTGAAGGGTCAGATGCTGATAATGAGAAGTCAATCAACACAGTTAATAAGTCTCAAGAGCAAGGTTTAAGCATATTAAGAACCATATACATTGAAGCAGTTAAAGCTCTTCCCTCTAGTTTTACTCTGAGAAAGCGGCTTTTGGAGATCTTGGAAGCAACTTCCTTTGTTAATTCAGAAGAAATACGTAAGAAAATACCAAGTGACATGAAGCGAGACTTCCCAACAGAACCAGAGTATTGGGACTGGCTTGCAAGACTTGAATACAATCCTGCAAGCACACAGGAGATGAGTGAAGAAATCACACTTTCTCAGGTAGAAAAAGCAGTTCAGGTATCTATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

U3_assoc_6

Protein Analysis

182

Amino Acids

21.3

Weight (kDa)

5.18

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018632)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0291751
rosa_laevigata	RLG00000012087
rosa_roxburghii	Rroxscaffold_7G00175780
rosa_rugosa	Rorug06G0221400
rosa_samantha	Rh6AG334000 Rh6BG341100 Rh6CG347200 Rh6DG334400 Rh6DG334500
rosa_wichuraiana	Rw6G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	296, 464
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	3 cut(s)	147, 258, 411
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	2 cut(s)	44, 58
BcoDI	GTCTC	3 cut(s)	147, 258, 411
BfaI	CTAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
BmsI	GCATC	1 cut(s)	205
Bpu14I	TTCGAA	2 cut(s)	44, 58
BpuEI	CTTGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	320, 527
BseNI	ACTGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	147, 258, 411
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	458
Bsp119I	TTCGAA	2 cut(s)	44, 58
Bsp143I	GATC	2 cut(s)	112, 348
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	321, 526
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	2 cut(s)	108, 315
BspT104I	TTCGAA	2 cut(s)	44, 58
BsrI	ACTGG	1 cut(s)	452
BssMI	GATC	2 cut(s)	112, 348
Bst4CI	ACNGT	4 cut(s)	119, 147, 203, 244
Bst6I	CTCTTC	2 cut(s)	108, 315
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	2 cut(s)	44, 58
BstC8I	GCNNGC	2 cut(s)	453, 478
BstDEI	CTNAG	2 cut(s)	329, 513
BstKTI	GATC	2 cut(s)	115, 351
BstMAI	GTCTC	3 cut(s)	147, 258, 411
BstMBI	GATC	2 cut(s)	112, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSNI	TACGTA	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	152, 208
Cac8I	GCNNGC	2 cut(s)	453, 478
CaiI	CAGNNNCTG	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	3 cut(s)	308, 340, 451
CviKI_1	RGCY	3 cut(s)	308, 340, 451
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	329, 513
DpnI	GATC	2 cut(s)	114, 350
DpnII	GATC	2 cut(s)	112, 348
Eam1104I	CTCTTC	2 cut(s)	108, 315
EarI	CTCTTC	2 cut(s)	108, 315
Eco105I	TACGTA	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	412
FaiI	YATR	6 cut(s)	172, 275, 287, 289, 410, 542
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	412
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	34, 214, 330, 379
Hpy188III	TCNNGA	3 cut(s)	107, 188, 257
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	4 cut(s)	119, 147, 203, 244
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	24, 455, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	329, 513
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	112, 348
LguI	GCTCTTC	2 cut(s)	108, 315
LpnPI	CCDG	6 cut(s)	433, 447, 470, 486, 500, 518
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	114, 350
MboI	GATC	2 cut(s)	112, 348
MboII	GAAGA	5 cut(s)	47, 95, 302, 392, 509
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	1 cut(s)	373
MnlI	CCTC	2 cut(s)	103, 325
MseI	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 547
MslI	CAYNNNNRTG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	2 cut(s)	112, 348
NlaIII	CATG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	2 cut(s)	44, 58
OliI	CACNNNNGTG	1 cut(s)	129
PciSI	GCTCTTC	2 cut(s)	108, 315
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	108, 315
SaqAI	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 547
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	112, 348
SetI	ASST	6 cut(s)	99, 268, 310, 391, 519, 537
SfaNI	GCATC	1 cut(s)	205
SfuI	TTCGAA	2 cut(s)	44, 58
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SnaBI	TACGTA	1 cut(s)	389
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	119, 147, 203, 244
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	3 cut(s)	44, 58, 106
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 547
Tru9I	TTAA	7 cut(s)	183, 246, 269, 278, 303, 372, 547
TscAI	CASTG	2 cut(s)	152, 208
TseFI	GTSAC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	20, 425
TspRI	CASTG	2 cut(s)	152, 208
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.