U3 small nucleolar RNA-associated protein 6 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0291751 |
| rosa_laevigata | RLG00000012087 |
| rosa_roxburghii | Rroxscaffold_7G00175780 |
| rosa_rugosa | Rorug06G0221400 |
| rosa_samantha | Rh6AG334000 Rh6BG341100 Rh6CG347200 Rh6DG334400 Rh6DG334500 |
| rosa_wichuraiana | Rw6G029080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 233 |
| AciI | CCGC | 1 cut(s) | 364 |
| AcyI | GRCGYC | 1 cut(s) | 230 |
| AgsI | TTSAA | 5 cut(s) | 59, 85, 284, 373, 491 |
| AleI | CACNNNNGTG | 1 cut(s) | 129 |
| AluBI | AGCT | 1 cut(s) | 335 |
| AluI | AGCT | 1 cut(s) | 335 |
| Alw26I | GTCTC | 2 cut(s) | 147, 221 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 218 |
| BbsI | GAAGAC | 1 cut(s) | 92 |
| BcoDI | GTCTC | 2 cut(s) | 147, 221 |
| BfaI | CTAG | 1 cut(s) | 345 |
| BglII | AGATCT | 2 cut(s) | 37, 375 |
| BisI | GCNGC | 1 cut(s) | 365 |
| BlsI | GCNGC | 1 cut(s) | 366 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpiI | GAAGAC | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 1 cut(s) | 230 |
| Bse1I | ACTGG | 1 cut(s) | 479 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseMII | CTCAG | 2 cut(s) | 347, 554 |
| BseNI | ACTGG | 1 cut(s) | 479 |
| BslFI | GGGAC | 1 cut(s) | 485 |
| BsmAI | GTCTC | 2 cut(s) | 147, 221 |
| BsmBI | CGTCTC | 2 cut(s) | 147, 221 |
| BsmFI | GGGAC | 1 cut(s) | 485 |
| Bsp143I | GATC | 2 cut(s) | 37, 375 |
| BspACI | CCGC | 1 cut(s) | 364 |
| BspCNI | CTCAG | 2 cut(s) | 348, 553 |
| BspQI | GCTCTTC | 2 cut(s) | 108, 342 |
| BsrI | ACTGG | 1 cut(s) | 479 |
| BssMI | GATC | 2 cut(s) | 37, 375 |
| BssNI | GRCGYC | 1 cut(s) | 230 |
| Bst4CI | ACNGT | 5 cut(s) | 147, 203, 244, 271, 320 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 342 |
| BstACI | GRCGYC | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 2 cut(s) | 480, 505 |
| BstDEI | CTNAG | 2 cut(s) | 356, 540 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstKTI | GATC | 2 cut(s) | 40, 378 |
| BstMAI | GTCTC | 2 cut(s) | 147, 221 |
| BstMBI | GATC | 2 cut(s) | 37, 375 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 1 cut(s) | 92 |
| BstX2I | RGATCY | 2 cut(s) | 37, 375 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 468 |
| BstYI | RGATCY | 2 cut(s) | 37, 375 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 3 cut(s) | 152, 208, 325 |
| Cac8I | GCNNGC | 2 cut(s) | 480, 505 |
| CaiI | CAGNNNCTG | 1 cut(s) | 218 |
| CviAII | CATG | 3 cut(s) | 119, 436, 565 |
| CviJI | RGCY | 3 cut(s) | 335, 367, 478 |
| CviKI_1 | RGCY | 3 cut(s) | 335, 367, 478 |
| DdeI | CTNAG | 2 cut(s) | 356, 540 |
| DpnI | GATC | 2 cut(s) | 39, 377 |
| DpnII | GATC | 2 cut(s) | 37, 375 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 342 |
| EarI | CTCTTC | 2 cut(s) | 108, 342 |
| Eco32I | GATATC | 1 cut(s) | 448 |
| EcoRV | GATATC | 1 cut(s) | 448 |
| Esp3I | CGTCTC | 2 cut(s) | 147, 221 |
| FaeI | CATG | 3 cut(s) | 122, 439, 568 |
| FaiI | YATR | 9 cut(s) | 120, 172, 302, 314, 316, 417, 437, 566, 571 |
| FaqI | GGGAC | 1 cut(s) | 485 |
| FatI | CATG | 3 cut(s) | 118, 435, 564 |
| Fnu4HI | GCNGC | 1 cut(s) | 365 |
| FokI | GGATG | 1 cut(s) | 125 |
| Fsp4HI | GCNGC | 1 cut(s) | 365 |
| FspBI | CTAG | 1 cut(s) | 345 |
| GluI | GCNGC | 1 cut(s) | 365 |
| Hin1I | GRCGYC | 1 cut(s) | 230 |
| Hin1II | CATG | 3 cut(s) | 122, 439, 568 |
| HinfI | GANTC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 214, 357, 382, 406 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 188, 284, 373 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4III | ACNGT | 5 cut(s) | 147, 203, 244, 271, 320 |
| HpyCH4IV | ACGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 482, 503 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 332 |
| HpyF3I | CTNAG | 2 cut(s) | 356, 540 |
| HpySE526I | ACGT | 1 cut(s) | 230 |
| Hsp92I | GRCGYC | 1 cut(s) | 230 |
| Hsp92II | CATG | 3 cut(s) | 122, 439, 568 |
| Kzo9I | GATC | 2 cut(s) | 37, 375 |
| LguI | GCTCTTC | 2 cut(s) | 108, 342 |
| LmnI | GCTCC | 1 cut(s) | 183 |
| LpnPI | CCDG | 5 cut(s) | 460, 474, 497, 513, 527 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 1 cut(s) | 345 |
| MaeII | ACGT | 1 cut(s) | 230 |
| MaeIII | GTNAC | 1 cut(s) | 431 |
| MalI | GATC | 2 cut(s) | 39, 377 |
| MboI | GATC | 2 cut(s) | 37, 375 |
| MboII | GAAGA | 7 cut(s) | 47, 47, 95, 97, 329, 419, 536 |
| MflI | RGATCY | 2 cut(s) | 37, 375 |
| MluCI | AATT | 2 cut(s) | 80, 400 |
| MlyI | GAGTC | 1 cut(s) | 82 |
| MnlI | CCTC | 2 cut(s) | 103, 352 |
| MseI | TTAA | 7 cut(s) | 183, 246, 276, 296, 305, 330, 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 332 |
| NdeII | GATC | 2 cut(s) | 37, 375 |
| NlaIII | CATG | 3 cut(s) | 122, 439, 568 |
| NmuCI | GTSAC | 1 cut(s) | 431 |
| OliI | CACNNNNGTG | 1 cut(s) | 129 |
| PciSI | GCTCTTC | 2 cut(s) | 108, 342 |
| PkrI | GCNGC | 1 cut(s) | 366 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| PstNI | CAGNNNCTG | 1 cut(s) | 218 |
| PsuI | RGATCY | 2 cut(s) | 37, 375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SapI | GCTCTTC | 2 cut(s) | 108, 342 |
| SaqAI | TTAA | 7 cut(s) | 183, 246, 276, 296, 305, 330, 399 |
| SatI | GCNGC | 1 cut(s) | 365 |
| Sau3AI | GATC | 2 cut(s) | 37, 375 |
| SchI | GAGTC | 1 cut(s) | 82 |
| SetI | ASST | 3 cut(s) | 233, 295, 337 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sse9I | AATT | 2 cut(s) | 80, 400 |
| SsiI | CCGC | 1 cut(s) | 364 |
| SspMI | CTAG | 1 cut(s) | 345 |
| TaaI | ACNGT | 5 cut(s) | 147, 203, 244, 271, 320 |
| TaiI | ACGT | 1 cut(s) | 233 |
| TaqI | TCGA | 3 cut(s) | 91, 106, 558 |
| TasI | AATT | 2 cut(s) | 80, 400 |
| TauI | GCSGC | 1 cut(s) | 367 |
| Tru1I | TTAA | 7 cut(s) | 183, 246, 276, 296, 305, 330, 399 |
| Tru9I | TTAA | 7 cut(s) | 183, 246, 276, 296, 305, 330, 399 |
| TscAI | CASTG | 3 cut(s) | 152, 208, 325 |
| TseFI | GTSAC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 1 cut(s) | 431 |
| TspDTI | ATGAA | 2 cut(s) | 20, 452 |
| TspRI | CASTG | 3 cut(s) | 152, 208, 325 |
| XspI | CTAG | 1 cut(s) | 345 |
| ZraI | GACGTC | 1 cut(s) | 231 |