RchiOBHm_Chr5g0005911

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014825
Physical Location & Seq
Reverse (-)
3715386 .. 3717953
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGCTCCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGGAACATACTTGTTTGGGTGGCTCAGAACAAGCCTTCTCGGAAGCGACTGTTTAAATCAAAGCCTCATGTCATTTTCCTTGATGTAGGCATGACTGCTGAACTTTCTAGAAGTGACAGAGTGAATTTACTTGAATGTTTCAAGGCTTTTGCACGTCATGATGGGCGCACTGCTGCTGAGTGCACACTAGGACTCTCTAAGCAACAGAATTGCCCAAATCCAAAGGCTTTCATTGAGGAAGTGGAGGAGTCATTCACTTTCTGGGGTACTCCAGAAGGTGATCTGGTTCATCCTGTTGATTGCATGCAGCAGTTACTGGAGAAAGTTAGGCGGCATAGAGTCAATGTTGATGGCAATGTTTGTACTGTCATGGTGACAACATTGGTTCTTGAGGGATGGCAGAGGAAACTTGATCCAGCATACAATGTGATGCATACCTTGCAAACTCTGCTTCTCAAGGCCGACTGGGCAAAGTCCCTTTCATACACAATTGAGGGGCTAATGGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

184

Amino Acids

20.92

Weight (kDa)

7.04

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 1 - 74 1.8e-10 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 373
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 2 cut(s) 310, 406
AgsI TTSAA 2 cut(s) 176, 184
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 2 cut(s) 6, 40
Alw21I GWGCWC 1 cut(s) 227
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 1 cut(s) 501
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 215, 349
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 332, 427
BaeGI GKGCMC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 202, 361
BccI CCATC 3 cut(s) 197, 386, 432
BciT130I CCWGG 2 cut(s) 8, 42
BfaI CTAG 2 cut(s) 150, 230
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 3 cut(s) 216, 350, 374
BlsI GCNGC 3 cut(s) 217, 351, 375
Bme1390I CCNGG 2 cut(s) 8, 42
BmgBI CACGTC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 2 cut(s) 8, 42
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 46, 462
BmuI ACTGGG 1 cut(s) 517
BpmI CTGGAG 2 cut(s) 297, 380
BpuEI CTTGAG 2 cut(s) 452, 482
BsaJI CCNNGG 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 363, 512
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 8, 42
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 3 cut(s) 37, 331, 443
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 80, 210
BseNI ACTGG 2 cut(s) 363, 512
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 202, 361
BshFI GGCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 227
BslFI GGGAC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 322, 454
BspACI CCGC 1 cut(s) 373
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 79, 211
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 2 cut(s) 363, 512
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 2 cut(s) 322, 454
Bst2UI CCWGG 2 cut(s) 8, 42
Bst4CI ACNGT 2 cut(s) 93, 409
BstAPI GCANNNNNTGC 2 cut(s) 481, 490
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 66, 219, 240, 552
BstF5I GGATG 3 cut(s) 37, 331, 443
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 325, 457
BstMBI GATC 2 cut(s) 322, 454
BstMWI GCNNNNNNNGC 3 cut(s) 481, 490, 509
BstNI CCWGG 2 cut(s) 8, 42
BstNSI RCATGY 3 cut(s) 29, 37, 349
BstSCI CCNGG 2 cut(s) 6, 40
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 202, 361
BsuRI GGCC 1 cut(s) 503
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 3 cut(s) 37, 331, 443
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 347
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 309, 405
CviAII CATG 7 cut(s) 26, 34, 110, 133, 200, 346, 412
CviJI RGCY 8 cut(s) 65, 76, 106, 188, 269, 503, 541, 548
CviKI_1 RGCY 8 cut(s) 65, 76, 106, 188, 269, 503, 541, 548
CviQI GTAC 2 cut(s) 309, 405
DdeI CTNAG 4 cut(s) 66, 219, 240, 552
DpnI GATC 2 cut(s) 324, 456
DpnII GATC 2 cut(s) 322, 454
DraI TTTAAA 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 6, 40
EcoT22I ATGCAT 2 cut(s) 39, 477
FaeI CATG 7 cut(s) 29, 37, 113, 136, 203, 349, 415
FaqI GGGAC 1 cut(s) 502
FatI CATG 7 cut(s) 25, 33, 109, 132, 199, 345, 411
Fnu4HI GCNGC 3 cut(s) 216, 350, 374
FokI GGATG 3 cut(s) 24, 318, 450
Fsp4HI GCNGC 3 cut(s) 216, 350, 374
FspBI CTAG 2 cut(s) 150, 230
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 216, 350, 374
GsuI CTGGAG 2 cut(s) 297, 380
HaeIII GGCC 1 cut(s) 503
HhaI GCGC 1 cut(s) 210
Hin1II CATG 7 cut(s) 29, 37, 113, 136, 203, 349, 415
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 3 cut(s) 234, 290, 381
HphI GGTGA 2 cut(s) 332, 427
Hpy166II GTNNAC 2 cut(s) 13, 225
Hpy188I TCNGA 2 cut(s) 69, 84
Hpy188III TCNNGA 4 cut(s) 150, 200, 314, 431
Hpy8I GTNNAC 2 cut(s) 13, 225
HpyAV CCTTC 2 cut(s) 87, 311
HpyCH4III ACNGT 2 cut(s) 93, 409
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 8 cut(s) 29, 37, 194, 225, 345, 349, 475, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 481, 490, 509
HpyF3I CTNAG 4 cut(s) 66, 219, 240, 552
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 7 cut(s) 29, 37, 113, 136, 203, 349, 415
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 322, 454
LmnI GCTCC 2 cut(s) 9, 553
Lsp1109I GCAGC 2 cut(s) 202, 361
LweI GCATC 2 cut(s) 46, 462
MaeI CTAG 2 cut(s) 150, 230
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 3 cut(s) 155, 354, 415
MalI GATC 2 cut(s) 324, 456
MboI GATC 2 cut(s) 322, 454
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 3 cut(s) 166, 250, 531
MlyI GAGTC 3 cut(s) 228, 299, 390
MnlI CCTC 6 cut(s) 117, 271, 280, 427, 438, 529
Mph1103I ATGCAT 2 cut(s) 39, 477
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 8, 42
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 2 cut(s) 8, 42
MwoI GCNNNNNNNGC 3 cut(s) 481, 490, 509
NdeII GATC 2 cut(s) 322, 454
NlaIII CATG 7 cut(s) 29, 37, 113, 136, 203, 349, 415
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 2 cut(s) 155, 415
NsiI ATGCAT 2 cut(s) 39, 477
NspI RCATGY 3 cut(s) 29, 37, 349
PaeI GCATGC 1 cut(s) 349
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 3 cut(s) 217, 351, 375
PleI GAGTC 3 cut(s) 228, 298, 389
PpsI GAGTC 3 cut(s) 228, 298, 389
Psp6I CCWGG 2 cut(s) 6, 40
PspGI CCWGG 2 cut(s) 6, 40
PspN4I GGNNCC 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 310, 406
RsaNI GTAC 2 cut(s) 309, 405
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 216, 350, 374
Sau3AI GATC 2 cut(s) 322, 454
SchI GAGTC 3 cut(s) 228, 299, 390
ScrFI CCNGG 2 cut(s) 8, 42
SduI GDGCHC 1 cut(s) 227
SetI ASST 3 cut(s) 199, 322, 482
SfaNI GCATC 2 cut(s) 46, 462
SmlI CTYRAG 2 cut(s) 431, 497
SmoI CTYRAG 2 cut(s) 431, 497
SphI GCATGC 1 cut(s) 349
Sse9I AATT 3 cut(s) 166, 250, 531
SsiI CCGC 1 cut(s) 373
SspMI CTAG 2 cut(s) 150, 230
StyD4I CCNGG 2 cut(s) 6, 40
TaaI ACNGT 2 cut(s) 93, 409
TaiI ACGT 1 cut(s) 199
TasI AATT 3 cut(s) 166, 250, 531
TatI WGTACW 1 cut(s) 404
TauI GCSGC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 155, 415
TseI GCWGC 2 cut(s) 215, 349
Tsp45I GTSAC 2 cut(s) 155, 415
TspDTI ATGAA 3 cut(s) 262, 320, 513
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 223
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 149
XceI RCATGY 3 cut(s) 29, 37, 349
XspI CTAG 2 cut(s) 150, 230
Zsp2I ATGCAT 2 cut(s) 39, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.