RchiOBHm_Chr5g0018621

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019741
Physical Location & Seq
Forward (+)
13150269 .. 13150844
576 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGGTTAATGTTTTGAATCAATATTTACCAACATGTTCTATAATCAACAGCTATGAAACCAAAGAAAGACTAAGAATTCGAATAACAGACTCGAGTAACCAAGGATGGGAAATCCCACAAGACCTTCTCCCTCGACAAACTCCACAAACATCCCACCATTCGATCCCCGAAAACGATCTCATTTTCACCCTCCACACCACCACCCCGTTCGGCTTCACTGTCACCCGCCGCTTCTCCAATGATGTTGCATTCGACGCCACCCCAAACCCCTCCAACCCTTCCTCCATCCTCGTCTTCAAGGACCAGTACATCCAGCTTTCCTCTTCTCTCCCGAAAACCCGATCTTCACTGTACGGCCTCGGTGAGCACACCAAAGCCTCCTTCAAGCTCCAATCCAATCAGACTCTAACACTCTGGACCGCCGACATTTTCAGCTCCATCCCCGACCTCAATCTCTATGGGTCCCACCCATTTTACATGGACGTGAGGTCATCGTCCGGTGATGGTAAAGTTAATGCAGGAACCACTATATCATGGCATGGATGTAAATTACGACGGCGACAGGATTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

191

Amino Acids

21.65

Weight (kDa)

8.57

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gal_mutarotas_2 PF13802 32 - 165 2e-10 Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019741)

Species Orthologous Gene IDs
malus_domestica MD10G1240300.v1.1
rosa_chinensis RchiOBHm_Chr5g0018621 RchiOBHm_Chr5g0020521
rosa_multiflora Rmu_co8282331.1_g000001 Rmu_co8283033.1_g000001 Rmu_sc0007192.1_g000001
rosa_samantha Rh5DG136500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 226, 229, 420
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 308, 353
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 3 cut(s) 16, 298, 385
AhdI GACNNNNNGTC 1 cut(s) 487
AjiI CACGTC 1 cut(s) 484
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 4 cut(s) 51, 316, 388, 435
AluI AGCT 4 cut(s) 51, 316, 388, 435
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 75
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AspS9I GGNCC 3 cut(s) 301, 417, 462
AsuHPI GGTGA 4 cut(s) 178, 214, 374, 512
AsuII TTCGAA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 3 cut(s) 301, 417, 462
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 4 cut(s) 99, 293, 446, 497
BceAI ACGGC 2 cut(s) 370, 572
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme18I GGWCC 3 cut(s) 301, 417, 462
BmeRI GACNNNNNGTC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 3 cut(s) 301, 417, 462
BmiI GGNNCC 3 cut(s) 463, 464, 523
BpiI GAAGAC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 100, 358
BsaWI WCCGGW 1 cut(s) 497
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 100, 358
BseGI GGATG 6 cut(s) 110, 149, 285, 309, 438, 548
BseLI CCNNNNNNNGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 304
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 162, 175, 341
BspACI CCGC 3 cut(s) 226, 229, 420
BspANI GGCC 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 463, 464, 523
BspPI GGATC 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 79
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 100, 358
BssMI GATC 3 cut(s) 162, 175, 341
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 220, 351
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 255
BstBI TTCGAA 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 6 cut(s) 110, 149, 285, 309, 438, 548
BstKTI GATC 3 cut(s) 165, 178, 344
BstMBI GATC 3 cut(s) 162, 175, 341
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 357
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 6 cut(s) 110, 149, 285, 309, 438, 548
BtsIMutI CAGTG 2 cut(s) 216, 347
Cfr13I GGNCC 3 cut(s) 301, 417, 462
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 307, 352
CviAII CATG 4 cut(s) 33, 478, 534, 539
CviJI RGCY 7 cut(s) 51, 213, 316, 357, 377, 388, 435
CviKI_1 RGCY 7 cut(s) 51, 213, 316, 357, 377, 388, 435
CviQI GTAC 2 cut(s) 307, 352
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 164, 177, 343
DpnII GATC 3 cut(s) 162, 175, 341
DriI GACNNNNNGTC 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 3 cut(s) 301, 417, 462
Eco88I CYCGRG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 36, 481, 537, 542
FaqI GGGAC 1 cut(s) 448
FatI CATG 4 cut(s) 32, 477, 533, 538
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 6 cut(s) 117, 136, 272, 296, 425, 555
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 498
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 4 cut(s) 36, 481, 537, 542
HinfI GANTC 3 cut(s) 16, 89, 403
HpaII CCGG 1 cut(s) 498
HphI GGTGA 4 cut(s) 178, 214, 374, 512
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 331, 415
Hpy99I CGWCG 2 cut(s) 257, 558
HpyAV CCTTC 3 cut(s) 134, 288, 391
HpyCH4III ACNGT 2 cut(s) 220, 351
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 2 cut(s) 248, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 4 cut(s) 36, 481, 537, 542
KflI GGGWCCC 1 cut(s) 462
Kzo9I GATC 3 cut(s) 162, 175, 341
LmnI GCTCC 2 cut(s) 393, 440
LpnPI CCDG 6 cut(s) 317, 326, 400, 504, 511, 548
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 95, 220
MalI GATC 3 cut(s) 164, 177, 343
MboI GATC 3 cut(s) 162, 175, 341
MboII GAAGA 3 cut(s) 286, 315, 336
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 75, 548
MlyI GAGTC 2 cut(s) 83, 397
MmeI TCCRAC 1 cut(s) 297
MseI TTAA 2 cut(s) 6, 513
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 3 cut(s) 162, 175, 341
NlaIII CATG 4 cut(s) 36, 481, 537, 542
NlaIV GGNNCC 3 cut(s) 463, 464, 523
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 36
NspV TTCGAA 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 91
PciI ACATGT 1 cut(s) 32
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 2 cut(s) 83, 397
PpsI GAGTC 2 cut(s) 83, 397
PpuMI RGGWCCY 1 cut(s) 462
PscI ACATGT 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 462
PspN4I GGNNCC 3 cut(s) 463, 464, 523
PspPI GGNCC 3 cut(s) 301, 417, 462
PspPPI RGGWCCY 1 cut(s) 462
PspXI VCTCGAGB 1 cut(s) 91
RsaI GTAC 2 cut(s) 308, 353
RsaNI GTAC 2 cut(s) 307, 352
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 2 cut(s) 6, 513
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 3 cut(s) 162, 175, 341
Sau96I GGNCC 3 cut(s) 301, 417, 462
SchI GAGTC 2 cut(s) 83, 397
SduI GDGCHC 1 cut(s) 369
SetI ASST 8 cut(s) 53, 126, 318, 390, 437, 450, 486, 491
Sfr274I CTCGAG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 3 cut(s) 301, 417, 462
SlaI CTCGAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 2 cut(s) 75, 548
SsiI CCGC 3 cut(s) 226, 229, 420
SspI AATATT 1 cut(s) 23
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 220, 351
TaiI ACGT 1 cut(s) 486
TaqI TCGA 5 cut(s) 79, 92, 133, 161, 252
TasI AATT 2 cut(s) 75, 548
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 6, 513
Tru9I TTAA 2 cut(s) 6, 513
TscAI CASTG 2 cut(s) 223, 354
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 223, 354
VpaK11BI GGWCC 3 cut(s) 301, 417, 462
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 36
XhoI CTCGAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.