Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8282331.1

Orthogroup ID

OG0019741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 835

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8282331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 694 bp

atgactaatattttaaatattatattgaacagctatgagaccaaagaccgtctaagagttcgaataacagactcaacgcaacaaagatgggagctcccacaagacattctcccccgccaaaaccaaacttcacagaacttttccgtcactgacaacgacctcgttttcaccctccgcaacaccaccccgttcggcttcaccatcacccgccgctcctctaacgacaccgttttcgacaccaccccgaacccctccgaccccaacaccaccttcatcttcaaggaccaatacttccagctctcctcctctcttcccaacaacaggtcctccctgtacggcctcggagagcacaccaagagcaccttcaagctcctagccaatcagactctgacactctggagcgccgacatcggcagcgtgagtcccgacctcaatctctatgggtcccaccccttctacatggacgtaagatcgccgtccgatgatggcaaggtcaaggcgggaaccactcacggagtgctgcttttgaacagcaatggcatggatgtaaattacacaggtgacagggttacttataatgtgattggcggagttgtggacttgtatttcttttcgggtccgacacccgaattggtgatggagcagtacactgagctcattggtcgacccgcccctatgccatattggtctttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

231

Amino Acids

26.1

Weight (kDa)

5.13

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019741)

Species	Orthologous Gene IDs
malus_domestica	MD10G1240300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0018621 RchiOBHm_Chr5g0020521
rosa_multiflora	Rmu_co8282331.1_g000001 Rmu_co8283033.1_g000001 Rmu_sc0007192.1_g000001
rosa_samantha	Rh5DG136500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	664
AciI	CCGC	7 cut(s)	115, 175, 208, 211, 500, 588, 669
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	2 cut(s)	335, 647
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	28, 280, 367, 529
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 347, 379
AluBI	AGCT	5 cut(s)	33, 94, 298, 370, 655
AluI	AGCT	5 cut(s)	33, 94, 298, 370, 655
Alw21I	GWGCWC	4 cut(s)	96, 351, 362, 657
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	414, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	4 cut(s)	283, 324, 444, 617
AsuHPI	GGTGA	5 cut(s)	160, 190, 196, 572, 646
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	4 cut(s)	283, 324, 444, 617
BanII	GRGCYC	2 cut(s)	96, 657
Bbv12I	GWGCWC	4 cut(s)	96, 351, 362, 657
BbvI	GCAGC	2 cut(s)	426, 507
BccI	CCATC	4 cut(s)	81, 209, 479, 631
BceAI	ACGGC	2 cut(s)	352, 460
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	3 cut(s)	211, 415, 521
BlsI	GCNGC	3 cut(s)	212, 416, 522
Bme18I	GGWCC	4 cut(s)	283, 324, 444, 617
BmgT120I	GGNCC	4 cut(s)	283, 324, 444, 617
BmiI	GGNNCC	4 cut(s)	445, 446, 505, 618
BpmI	CTGGAG	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	642
BseRI	GAGGAG	3 cut(s)	205, 292, 295
BseXI	GCAGC	2 cut(s)	426, 507
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	4 cut(s)	96, 351, 362, 657
BslFI	GGGAC	2 cut(s)	408, 430
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	408, 430
BsnI	GGCC	1 cut(s)	339
Bso31I	GGTCTC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	4 cut(s)	96, 351, 362, 657
Bsp143I	GATC	1 cut(s)	470
BspACI	CCGC	7 cut(s)	115, 175, 208, 211, 500, 588, 669
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	4 cut(s)	445, 446, 505, 618
BspT104I	TTCGAA	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	50, 229
Bst6I	CTCTTC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	53, 651
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	473
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	426, 507
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	2 cut(s)	147, 648
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	4 cut(s)	283, 324, 444, 617
Csp6I	GTAC	2 cut(s)	334, 646
CviAII	CATG	2 cut(s)	460, 541
CviJI	RGCY	8 cut(s)	33, 94, 195, 298, 339, 370, 377, 655
CviKI_1	RGCY	8 cut(s)	33, 94, 195, 298, 339, 370, 377, 655
CviQI	GTAC	2 cut(s)	334, 646
DdeI	CTNAG	2 cut(s)	53, 651
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
DraI	TTTAAA	1 cut(s)	15
DraIII	CACNNNGTG	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	2 cut(s)	94, 655
Eco24I	GRGCYC	2 cut(s)	96, 657
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	4 cut(s)	283, 324, 444, 617
Eco53kI	GAGCTC	2 cut(s)	94, 655
EcoICRI	GAGCTC	2 cut(s)	94, 655
EcoO109I	RGGNCCY	2 cut(s)	324, 444
EcoT38I	GRGCYC	2 cut(s)	96, 657
FaeI	CATG	2 cut(s)	463, 544
FaiI	YATR	8 cut(s)	23, 36, 441, 461, 542, 576, 677, 682
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	2 cut(s)	408, 430
FatI	CATG	2 cut(s)	459, 540
FauI	CCCGC	4 cut(s)	122, 215, 493, 676
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	3 cut(s)	211, 415, 521
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	2 cut(s)	96, 657
Fsp4HI	GCNGC	3 cut(s)	211, 415, 521
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	3 cut(s)	211, 415, 521
GsuI	CTGGAG	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	463, 544
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HinfI	GANTC	3 cut(s)	71, 385, 421
HphI	GGTGA	5 cut(s)	160, 190, 196, 572, 646
Hpy166II	GTNNAC	3 cut(s)	598, 648, 665
Hpy188I	TCNGA	6 cut(s)	256, 344, 384, 390, 481, 621
Hpy188III	TCNNGA	2 cut(s)	397, 425
Hpy8I	GTNNAC	3 cut(s)	598, 648, 665
HpyAV	CCTTC	3 cut(s)	280, 373, 463
HpyCH4III	ACNGT	2 cut(s)	50, 229
HpyCH4IV	ACGT	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	53, 651
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	463, 544
HspAI	GCGC	1 cut(s)	402
KflI	GGGWCCC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	470
LmnI	GCTCC	6 cut(s)	91, 99, 218, 375, 399, 640
LpnPI	CCDG	6 cut(s)	307, 308, 344, 382, 543, 550
Lsp1109I	GCAGC	2 cut(s)	426, 507
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	3 cut(s)	145, 560, 568
MalI	GATC	1 cut(s)	472
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	470
MboII	GAAGA	2 cut(s)	268, 302
MhlI	GDGCHC	4 cut(s)	96, 351, 362, 657
MluCI	AATT	2 cut(s)	550, 629
MlyI	GAGTC	3 cut(s)	65, 379, 430
MmeI	TCCRAC	2 cut(s)	279, 644
MnlI	CCTC	9 cut(s)	170, 182, 226, 262, 313, 316, 337, 350, 440
MseI	TTAA	1 cut(s)	14
NdeII	GATC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	463, 544
NlaIV	GGNNCC	4 cut(s)	445, 446, 505, 618
NmuCI	GTSAC	2 cut(s)	145, 560
NspV	TTCGAA	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	212, 416, 522
PleI	GAGTC	3 cut(s)	65, 379, 429
PpsI	GAGTC	3 cut(s)	65, 379, 429
PpuMI	RGGWCCY	2 cut(s)	324, 444
PsiI	TTATAA	1 cut(s)	576
Psp124BI	GAGCTC	2 cut(s)	96, 657
Psp5II	RGGWCCY	2 cut(s)	324, 444
PspN4I	GGNNCC	4 cut(s)	445, 446, 505, 618
PspPI	GGNCC	4 cut(s)	283, 324, 444, 617
PspPPI	RGGWCCY	2 cut(s)	324, 444
PstNI	CAGNNNCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	335, 647
RsaNI	GTAC	2 cut(s)	334, 646
SacI	GAGCTC	2 cut(s)	96, 657
SalI	GTCGAC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	211, 415, 521
Sau3AI	GATC	1 cut(s)	470
Sau96I	GGNCC	4 cut(s)	283, 324, 444, 617
SchI	GAGTC	3 cut(s)	65, 379, 430
SduI	GDGCHC	4 cut(s)	96, 351, 362, 657
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	4 cut(s)	283, 324, 444, 617
Sse9I	AATT	2 cut(s)	550, 629
SsiI	CCGC	7 cut(s)	115, 175, 208, 211, 500, 588, 669
SspI	AATATT	2 cut(s)	10, 19
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	2 cut(s)	96, 657
TaaI	ACNGT	2 cut(s)	50, 229
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	3 cut(s)	61, 234, 664
TasI	AATT	2 cut(s)	550, 629
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	154, 655
TseFI	GTSAC	2 cut(s)	145, 560
TseI	GCWGC	2 cut(s)	414, 520
Tsp45I	GTSAC	2 cut(s)	145, 560
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	2 cut(s)	133, 528
TspRI	CASTG	2 cut(s)	154, 655
VpaK11BI	GGWCC	4 cut(s)	283, 324, 444, 617
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.