RchiOBHm_Chr5g0020061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018318
Physical Location & Seq
Forward (+)
14395521 .. 14395986
466 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGTCGTCGGAAGCTGCGAAGGGAGCGACGACGGGATTCGTGGAGTGCGATCGGCTGCACCGCGCGCTGGTGGATTGTCACCGTCGGATCCCGGCGGGTCGGGCGCGGGAATCGGGTTGCCGGCACCTGAACCGCGGACTTGCCGAGTGCTTGGTGTCGGTGGCGTGCCCGGACGAGGCCGAAGCCGTTCGGAGCCTCTGCGGTAGCAGCGGCACCGGTCTGAAGCGGACTCAGTGCCAACAGGCTCAGCTCTCCCTCTCTCTCTGCCTCTCCTCTCATCAAACCAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

97

Amino Acids

10.36

Weight (kDa)

8.51

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 123, 212
AccII CGCG 4 cut(s) 63, 65, 106, 135
AciI CCGC 8 cut(s) 61, 95, 106, 133, 135, 201, 210, 226
AclWI GGATC 2 cut(s) 82, 95
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 67, 175
AgeI ACCGGT 1 cut(s) 215
AluBI AGCT 2 cut(s) 14, 250
AluI AGCT 2 cut(s) 14, 250
AlwI GGATC 2 cut(s) 82, 95
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 14, 55, 207
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 3 cut(s) 65, 67, 106
AsuC2I CCSGG 2 cut(s) 92, 170
AsuHPI GGTGA 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 87
BanI GGYRCC 2 cut(s) 123, 212
BbvI GCAGC 2 cut(s) 42, 219
BceAI ACGGC 1 cut(s) 170
BcnI CCSGG 2 cut(s) 92, 170
BisI GCNGC 4 cut(s) 15, 56, 208, 211
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 4 cut(s) 16, 57, 209, 212
Bme1390I CCNGG 2 cut(s) 92, 170
BmiI GGNNCC 4 cut(s) 89, 125, 194, 214
BmrFI CCNGG 2 cut(s) 92, 170
Bpu1102I GCTNAGC 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 92, 170
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 175
Bse118I RCCGGY 2 cut(s) 120, 215
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 67, 175
BseMII CTCAG 2 cut(s) 245, 260
BsePI GCGCGC 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 42, 219
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 4 cut(s) 63, 65, 106, 135
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 123, 212
BshTI ACCGGT 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 92, 121, 170, 216
BslI CCNNNNNNNGG 2 cut(s) 67, 175
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 49, 87
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 8 cut(s) 61, 95, 106, 133, 135, 201, 210, 226
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 244, 259
BspFNI CGCG 4 cut(s) 63, 65, 106, 135
BspLI GGNNCC 4 cut(s) 89, 125, 194, 214
BspPI GGATC 2 cut(s) 82, 95
BspT107I GGYRCC 2 cut(s) 123, 212
BsrFI RCCGGY 2 cut(s) 120, 215
BssAI RCCGGY 2 cut(s) 120, 215
BssECI CCNNGG 1 cut(s) 133
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 2 cut(s) 49, 87
Bst4CI ACNGT 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 65, 122, 166
BstDEI CTNAG 2 cut(s) 231, 246
BstDSI CCRYGG 1 cut(s) 133
BstFNI CGCG 4 cut(s) 63, 65, 106, 135
BstHHI GCGC 3 cut(s) 65, 67, 106
BstKTI GATC 2 cut(s) 52, 90
BstMBI GATC 2 cut(s) 49, 87
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 4 cut(s) 23, 64, 101, 207
BstSCI CCNGG 2 cut(s) 90, 168
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 4 cut(s) 63, 65, 106, 135
BstV1I GCAGC 2 cut(s) 42, 219
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 65, 122, 166
CfoI GCGC 3 cut(s) 65, 67, 106
Cfr10I RCCGGY 2 cut(s) 120, 215
Cfr42I CCGCGG 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 215
CviJI RGCY 7 cut(s) 14, 55, 179, 185, 195, 245, 250
CviKI_1 RGCY 7 cut(s) 14, 55, 179, 185, 195, 245, 250
DdeI CTNAG 2 cut(s) 231, 246
DpnI GATC 2 cut(s) 51, 89
DpnII GATC 2 cut(s) 49, 87
Eco57I CTGAAG 1 cut(s) 242
FauI CCCGC 2 cut(s) 88, 99
Fnu4HI GCNGC 4 cut(s) 15, 56, 208, 211
Fsp4HI GCNGC 4 cut(s) 15, 56, 208, 211
GlaI GCGC 3 cut(s) 64, 66, 105
GluI GCNGC 4 cut(s) 15, 56, 208, 211
HaeIII GGCC 1 cut(s) 179
HapII CCGG 4 cut(s) 92, 121, 170, 216
HhaI GCGC 3 cut(s) 65, 67, 106
Hin6I GCGC 3 cut(s) 63, 65, 104
HinP1I GCGC 3 cut(s) 63, 65, 104
HinfI GANTC 3 cut(s) 36, 110, 229
HpaII CCGG 4 cut(s) 92, 121, 170, 216
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 4 cut(s) 10, 87, 192, 222
Hpy99I CGWCG 4 cut(s) 10, 31, 34, 87
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 64, 101, 207
HpyF3I CTNAG 2 cut(s) 231, 246
HspAI GCGC 3 cut(s) 63, 65, 104
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 49, 87
LmnI GCTCC 2 cut(s) 23, 192
LpnPI CCDG 7 cut(s) 53, 105, 134, 140, 183, 227, 229
Lsp1109I GCAGC 2 cut(s) 42, 219
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 51, 89
MboI GATC 2 cut(s) 49, 87
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 5 cut(s) 169, 206, 266, 278, 283
MroNI GCCGGC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 135, 210
MspI CCGG 4 cut(s) 92, 121, 170, 216
MspR9I CCNGG 2 cut(s) 92, 170
MvnI CGCG 4 cut(s) 63, 65, 106, 135
MwoI GCNNNNNNNGC 4 cut(s) 23, 64, 101, 207
NaeI GCCGGC 1 cut(s) 122
NciI CCSGG 2 cut(s) 92, 170
NdeII GATC 2 cut(s) 49, 87
NgoMIV GCCGGC 1 cut(s) 120
NlaIV GGNNCC 4 cut(s) 89, 125, 194, 214
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 77
PauI GCGCGC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 45
PdiI GCCGGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 36, 110
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 4 cut(s) 16, 57, 209, 212
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspN4I GGNNCC 4 cut(s) 89, 125, 194, 214
PsuI RGATCY 1 cut(s) 87
PteI GCGCGC 1 cut(s) 63
PvuI CGATCG 1 cut(s) 52
SacII CCGCGG 1 cut(s) 136
SatI GCNGC 4 cut(s) 15, 56, 208, 211
Sau3AI GATC 2 cut(s) 49, 87
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 92, 170
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 16, 129, 252
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SsiI CCGC 8 cut(s) 61, 95, 106, 133, 135, 201, 210, 226
StyD4I CCNGG 2 cut(s) 90, 168
TaaI ACNGT 1 cut(s) 83
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 36, 110
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 3 cut(s) 14, 55, 207
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.