RchiOBHm_Chr5g0031981

Reticulon-4-interacting protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019427
Physical Location & Seq
Forward (+)
25701818 .. 25702772
955 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGGGGATACTGAGGTCACATGGCGGCTTCAAGGTTGGGCTGCGCCGCATCGTCACCGCCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCCGAGGTCCTGGAGCTCCGGCCCATTGTCGACGTTCCTGATCTCAAGCCCAATGAGGTCCTCGTTCGCACTCGCGCCGTCTCAATCAATCCCCTTGATACCAGAATGCGGTCTGGCTATGGTCGTTCAATATTTGGACCTCAGCTACCTCTTATTCTGGGACGTGATATTAGTGGTGAAGTTGCAGCTGAGCTTCAGTTAAGGGACTTACTGTAG

Protein Analysis

102

Amino Acids

11.2

Weight (kDa)

10.66

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 47 - 94 1.6e-08 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019427)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031981
rosa_laevigata RLG00000031411
rosa_multiflora Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AccII CGCG 2 cut(s) 82, 168
AciI CCGC 6 cut(s) 24, 46, 57, 80, 90, 202
AcuI CTGAAG 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 86, 201
AgsI TTSAA 2 cut(s) 31, 222
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 4 cut(s) 109, 238, 281, 286
AluI AGCT 4 cut(s) 109, 238, 281, 286
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 2 cut(s) 92, 113
ApaI GGGCCC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 40, 76, 278
AspLEI GCGC 3 cut(s) 45, 84, 170
AspS9I GGNCC 6 cut(s) 92, 93, 100, 114, 151, 230
AsuHPI GGTGA 2 cut(s) 46, 281
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 3 cut(s) 100, 151, 230
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 96, 111
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 27, 63, 290
BceAI ACGGC 2 cut(s) 53, 155
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 178
BfmI CTRYAG 2 cut(s) 61, 305
BisI GCNGC 6 cut(s) 25, 41, 46, 77, 80, 279
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 6 cut(s) 26, 42, 47, 78, 81, 280
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 3 cut(s) 100, 151, 230
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 6 cut(s) 92, 93, 100, 114, 151, 230
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 69, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 201
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 69, 96
BseLI CCNNNNNNNGG 2 cut(s) 86, 201
BseMII CTCAG 2 cut(s) 248, 273
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 3 cut(s) 27, 63, 290
Bsh1236I CGCG 2 cut(s) 82, 168
BshFI GGCC 2 cut(s) 94, 115
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 86, 201
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 2 cut(s) 94, 115
BsoBI CYCGRG 1 cut(s) 95
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 96, 111
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 6 cut(s) 24, 46, 57, 80, 90, 202
BspANI GGCC 2 cut(s) 94, 115
BspCNI CTCAG 2 cut(s) 247, 274
BspFNI CGCG 2 cut(s) 82, 168
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 69, 96
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 61, 92
BstDEI CTNAG 3 cut(s) 11, 234, 282
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 2 cut(s) 82, 168
BstHHI GCGC 3 cut(s) 45, 84, 170
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 2 cut(s) 61, 305
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 2 cut(s) 82, 168
BstV1I GCAGC 3 cut(s) 27, 63, 290
BsuRI GGCC 2 cut(s) 94, 115
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 61, 92
CfoI GCGC 3 cut(s) 45, 84, 170
Cfr13I GGNCC 6 cut(s) 92, 93, 100, 114, 151, 230
CviAII CATG 1 cut(s) 20
DdeI CTNAG 3 cut(s) 11, 234, 282
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 96, 111
Eco47I GGWCC 3 cut(s) 100, 151, 230
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 2 cut(s) 100, 151
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 96, 111
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 213
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 6 cut(s) 25, 41, 46, 77, 80, 279
FriOI GRGCYC 2 cut(s) 96, 111
Fsp4HI GCNGC 6 cut(s) 25, 41, 46, 77, 80, 279
GlaI GCGC 3 cut(s) 44, 83, 169
GluI GCNGC 6 cut(s) 25, 41, 46, 77, 80, 279
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 94, 115
HapII CCGG 1 cut(s) 112
HhaI GCGC 3 cut(s) 45, 84, 170
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 3 cut(s) 43, 82, 168
HinP1I GCGC 3 cut(s) 43, 82, 168
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 46, 281
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 2 cut(s) 126, 256
HpyCH4V TGCA 2 cut(s) 63, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 11, 234, 282
HpySE526I ACGT 2 cut(s) 126, 256
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 3 cut(s) 43, 82, 168
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 106, 114
LpnPI CCDG 8 cut(s) 73, 89, 116, 125, 144, 192, 208, 236
Lsp1109I GCAGC 3 cut(s) 27, 63, 290
LweI GCATC 1 cut(s) 57
MaeII ACGT 2 cut(s) 126, 256
MaeIII GTNAC 2 cut(s) 15, 52
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 96, 111
MnlI CCTC 6 cut(s) 6, 91, 142, 164, 243, 252
MseI TTAA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 2 cut(s) 82, 168
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 15, 52
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 6 cut(s) 26, 42, 47, 78, 81, 280
PpuMI RGGWCCY 2 cut(s) 100, 151
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 2 cut(s) 100, 151
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 94
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 6 cut(s) 92, 93, 100, 114, 151, 230
PspPPI RGGWCCY 2 cut(s) 100, 151
PstI CTGCAG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 111
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 6 cut(s) 25, 41, 46, 77, 80, 279
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 6 cut(s) 92, 93, 100, 114, 151, 230
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 96, 111
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 61, 305
SinI GGWCC 3 cut(s) 100, 151, 230
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 6 cut(s) 24, 46, 57, 80, 90, 202
SspI AATATT 1 cut(s) 225
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 2 cut(s) 129, 259
TaqI TCGA 1 cut(s) 123
TauI GCSGC 3 cut(s) 27, 48, 82
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseFI GTSAC 2 cut(s) 15, 52
TseI GCWGC 3 cut(s) 40, 76, 278
Tsp45I GTSAC 2 cut(s) 15, 52
VpaK11BI GGWCC 3 cut(s) 100, 151, 230
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.