RLG00000031411

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019427
Physical Location & Seq
Forward (+)
4910373 .. 4911576
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031411

Sequence Viewer

Length: 573 bp
ATGGTTGTACTTGCAGATCGGTCGGAGTACTTGCAGATTGATCAAATCCTCCTCGAAATTCTGGCCAAGCTGCCGGAGCCGGATCAGAAGCCGAGCTCGCTGGTCTGCAAGCGGTGGCTAAGCCTCCAGGGCCGGCTTGTGAGGTCCGTGAAGGTGAAAGACTGGAGCTTTGTGGAATCGGGTCGGGTTATTTCAAGATTTGTGGAATCGAACGGCGACGAGAACGTTGGAGTGGCTGGAGCTCCGACTGGAGCTTCTTACCCAAAGGTAGAGTCCCAGGTCCAGGCAAATCCAAGCCAACAGGAGAACGATGCTGCACCTCCTGCCAATCCTTCGCCGCCGCGGCCTCCAAGCTTTCTAGCTGCCGGTCATTCCACCACTACATCAAGGTTGAAATCCTGCAAGTCGCTCCGCTGTCTGCCTAAACTCGCTGACAGGATCGACCTCAATTCGCTTCCCCAAACACCTGCAACCCTTGGCTACGATGCCTCGCTGCAAACCCAACAAACTCATAGACTTCCTGTCCCCAATACCTACTGCCGACACCACTCGACCCAGACAACAAACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like Remorin_C

Protein Analysis

191

Amino Acids

20.82

Weight (kDa)

8.96

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019427)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031981
rosa_laevigata RLG00000031411
rosa_multiflora Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 475
AccII CGCG 1 cut(s) 343
AciI CCGC 5 cut(s) 112, 338, 341, 343, 412
AclI AACGTT 1 cut(s) 225
AclWI GGATC 2 cut(s) 90, 446
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 2 cut(s) 9, 29
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 195, 394
AhdI GACNNNNNGTC 1 cut(s) 521
AjnI CCWGG 3 cut(s) 126, 276, 282
AluBI AGCT 7 cut(s) 70, 96, 168, 242, 254, 354, 362
AluI AGCT 7 cut(s) 70, 96, 168, 242, 254, 354, 362
Alw21I GWGCWC 2 cut(s) 98, 244
AlwI GGATC 2 cut(s) 90, 446
AoxI GGCC 3 cut(s) 63, 130, 344
ApeKI GCWGC 4 cut(s) 70, 314, 362, 493
ApoI RAATTY 1 cut(s) 57
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 257, 289
AspS9I GGNCC 3 cut(s) 130, 144, 280
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 144, 280
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 2 cut(s) 98, 244
Bbv12I GWGCWC 2 cut(s) 98, 244
BbvI GCAGC 4 cut(s) 57, 301, 349, 480
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 3 cut(s) 128, 278, 284
BclI TGATCA 1 cut(s) 40
BfaI CTAG 2 cut(s) 359, 571
BfuAI ACCTGC 1 cut(s) 475
BglI GCCNNNNNGGC 2 cut(s) 129, 343
BisI GCNGC 7 cut(s) 71, 315, 338, 341, 344, 363, 494
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 7 cut(s) 72, 316, 339, 342, 345, 364, 495
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 128, 278, 284
Bme18I GGWCC 2 cut(s) 144, 280
BmeRI GACNNNNNGTC 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 130, 144, 280
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 3 cut(s) 128, 278, 284
BmsI GCATC 2 cut(s) 301, 475
BpmI CTGGAG 4 cut(s) 110, 184, 258, 270
Bpu1102I GCTNAGC 1 cut(s) 119
BsaJI CCNNGG 4 cut(s) 127, 276, 341, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 2 cut(s) 132, 365
Bse1I ACTGG 2 cut(s) 167, 253
BseBI CCWGG 3 cut(s) 128, 278, 284
BseDI CCNNGG 4 cut(s) 127, 276, 341, 475
BseLI CCNNNNNNNGG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 167, 253
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 4 cut(s) 57, 301, 349, 480
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 3 cut(s) 65, 132, 346
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 98, 244
BsiSI CCGG 4 cut(s) 74, 80, 133, 366
BslFI GGGAC 2 cut(s) 259, 509
BslI CCNNNNNNNGG 1 cut(s) 283
BsmFI GGGAC 2 cut(s) 259, 509
BsnI GGCC 3 cut(s) 65, 132, 346
Bsp1286I GDGCHC 2 cut(s) 98, 244
Bsp143I GATC 4 cut(s) 16, 40, 82, 438
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 5 cut(s) 112, 338, 341, 343, 412
BspANI GGCC 3 cut(s) 65, 132, 346
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 2 cut(s) 90, 446
BsrFI RCCGGY 2 cut(s) 132, 365
BsrI ACTGG 2 cut(s) 167, 253
BssAI RCCGGY 2 cut(s) 132, 365
BssECI CCNNGG 4 cut(s) 127, 276, 341, 475
BssMI GATC 4 cut(s) 16, 40, 82, 438
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 3 cut(s) 128, 278, 284
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 98, 110, 134
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 341
BstFNI CGCG 1 cut(s) 343
BstKTI GATC 4 cut(s) 19, 43, 85, 441
BstMBI GATC 4 cut(s) 16, 40, 82, 438
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 76, 97, 129, 323, 343
BstNI CCWGG 3 cut(s) 128, 278, 284
BstSCI CCNGG 3 cut(s) 126, 276, 282
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 4 cut(s) 57, 301, 349, 480
BsuRI GGCC 3 cut(s) 65, 132, 346
BtgI CCRYGG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 98, 110, 134
Cfr10I RCCGGY 2 cut(s) 132, 365
Cfr13I GGNCC 3 cut(s) 130, 144, 280
Cfr42I CCGCGG 1 cut(s) 344
Csp6I GTAC 2 cut(s) 8, 28
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviQI GTAC 2 cut(s) 8, 28
DdeI CTNAG 1 cut(s) 119
DpnI GATC 4 cut(s) 18, 42, 84, 440
DpnII GATC 4 cut(s) 16, 40, 82, 438
DriI GACNNNNNGTC 1 cut(s) 521
EaeI YGGCCR 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 521
Ecl136II GAGCTC 2 cut(s) 96, 242
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 2 cut(s) 98, 244
Eco47I GGWCC 2 cut(s) 144, 280
Eco53kI GAGCTC 2 cut(s) 96, 242
EcoICRI GAGCTC 2 cut(s) 96, 242
EcoRII CCWGG 3 cut(s) 126, 276, 282
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 2 cut(s) 98, 244
ErhI CCWWGG 1 cut(s) 475
FaiI YATR 1 cut(s) 513
FaqI GGGAC 2 cut(s) 259, 509
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 7 cut(s) 71, 315, 338, 341, 344, 363, 494
FriOI GRGCYC 2 cut(s) 98, 244
Fsp4HI GCNGC 7 cut(s) 71, 315, 338, 341, 344, 363, 494
FspBI CTAG 2 cut(s) 359, 571
GluI GCNGC 7 cut(s) 71, 315, 338, 341, 344, 363, 494
GsuI CTGGAG 4 cut(s) 110, 184, 258, 270
HaeIII GGCC 3 cut(s) 65, 132, 346
HapII CCGG 4 cut(s) 74, 80, 133, 366
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 3 cut(s) 176, 206, 272
HpaII CCGG 4 cut(s) 74, 80, 133, 366
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 25, 87, 246
Hpy188III TCNNGA 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 145, 342
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 7 cut(s) 14, 34, 108, 317, 402, 470, 496
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 97, 129, 323, 343
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 225
KroI GCCGGC 1 cut(s) 132
KroNI GCCGGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 40
KspI CCGCGG 1 cut(s) 344
Kzo9I GATC 4 cut(s) 16, 40, 82, 438
LmnI GCTCC 6 cut(s) 76, 165, 239, 247, 251, 414
Lsp1109I GCAGC 4 cut(s) 57, 301, 349, 480
LweI GCATC 2 cut(s) 301, 475
MaeI CTAG 2 cut(s) 359, 571
MaeII ACGT 1 cut(s) 225
MalI GATC 4 cut(s) 18, 42, 84, 440
MboI GATC 4 cut(s) 16, 40, 82, 438
MhlI GDGCHC 2 cut(s) 98, 244
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 57, 448
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 208, 269
MnlI CCTC 8 cut(s) 59, 62, 134, 135, 330, 357, 455, 499
Mox20I TGGCCA 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 2 cut(s) 343, 414
MspI CCGG 4 cut(s) 74, 80, 133, 366
MspR9I CCNGG 3 cut(s) 128, 278, 284
MvaI CCWGG 3 cut(s) 128, 278, 284
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 5 cut(s) 76, 97, 129, 323, 343
NaeI GCCGGC 1 cut(s) 134
NdeII GATC 4 cut(s) 16, 40, 82, 438
NgoMIV GCCGGC 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 475
PdiI GCCGGC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 176, 206
PkrI GCNGC 7 cut(s) 72, 316, 339, 342, 345, 364, 495
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp124BI GAGCTC 2 cut(s) 98, 244
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 126, 276, 282
PspGI CCWGG 3 cut(s) 126, 276, 282
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 130, 144, 280
RsaI GTAC 2 cut(s) 9, 29
RsaNI GTAC 2 cut(s) 8, 28
SacI GAGCTC 2 cut(s) 98, 244
SacII CCGCGG 1 cut(s) 344
SatI GCNGC 7 cut(s) 71, 315, 338, 341, 344, 363, 494
Sau3AI GATC 4 cut(s) 16, 40, 82, 438
Sau96I GGNCC 3 cut(s) 130, 144, 280
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 3 cut(s) 128, 278, 284
SduI GDGCHC 2 cut(s) 98, 244
SfaNI GCATC 2 cut(s) 301, 475
Sfr303I CCGCGG 1 cut(s) 344
SgrBI CCGCGG 1 cut(s) 344
SinI GGWCC 2 cut(s) 144, 280
Sse9I AATT 2 cut(s) 57, 448
SsiI CCGC 5 cut(s) 112, 338, 341, 343, 412
SspMI CTAG 2 cut(s) 359, 571
SstI GAGCTC 2 cut(s) 98, 244
StyD4I CCNGG 3 cut(s) 126, 276, 282
StyI CCWWGG 1 cut(s) 475
TaiI ACGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 54, 209, 441, 551
TaqII GACCGA 1 cut(s) 9
TasI AATT 2 cut(s) 57, 448
TatI WGTACW 2 cut(s) 7, 27
TauI GCSGC 3 cut(s) 340, 343, 346
TfiI GAWTC 2 cut(s) 176, 206
TseI GCWGC 4 cut(s) 70, 314, 362, 493
TspGWI ACGGA 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 144, 280
XapI RAATTY 1 cut(s) 57
XspI CTAG 2 cut(s) 359, 571
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.