Rh1BG274300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0019427
Physical Location & Seq
Reverse (-)
41082334 .. 41085295
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG274300.1

Sequence Viewer

Length: 246 bp
ATGGCTGTACTTGCAGATCGGTCGGAGTACTTGCAGATCGATCAAATCCTCCTCGAAATTCTGGCCAAGCTGCCGGAGCCGGATCGGAAGCCGAGCTCTCTAGTCTGCAAGCGGTGGCTAAGCCTCCAGGGCCGGCTTGTGAGGTCCGTGAAGGTGAAAGAAATGACTGACCAGATAAAAGGTTACTTGATCGTCAAGGTCAAAGGCGTTTTTGTTTCTGGCATGTCAGATGAAAATCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like Remorin_C

Protein Analysis

81

Amino Acids

9.14

Weight (kDa)

9.21

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019427)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031981
rosa_laevigata RLG00000031411
rosa_multiflora Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 2 cut(s) 9, 29
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 70, 96
AluI AGCT 2 cut(s) 70, 96
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 1 cut(s) 90
AoxI GGCC 2 cut(s) 63, 130
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 130, 144
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 57
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 101, 239
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 72
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 130, 144
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 65, 132
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 3 cut(s) 74, 80, 133
BsnI GGCC 2 cut(s) 65, 132
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 5 cut(s) 16, 36, 40, 82, 189
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 65, 132
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 5 cut(s) 16, 36, 40, 82, 189
Bst2UI CCWGG 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 110, 134
BstDEI CTNAG 1 cut(s) 119
BstKTI GATC 5 cut(s) 19, 39, 43, 85, 192
BstMBI GATC 5 cut(s) 16, 36, 40, 82, 189
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 3 cut(s) 11, 76, 129
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 2 cut(s) 65, 132
BsuTUI ATCGAT 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 110, 134
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 130, 144
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 8, 28
CviAII CATG 1 cut(s) 223
CviQI GTAC 2 cut(s) 8, 28
DdeI CTNAG 1 cut(s) 119
DpnI GATC 5 cut(s) 18, 38, 42, 84, 191
DpnII GATC 5 cut(s) 16, 36, 40, 82, 189
EaeI YGGCCR 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 1 cut(s) 226
FaiI YATR 1 cut(s) 224
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 101, 239
GluI GCNGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 2 cut(s) 65, 132
HapII CCGG 3 cut(s) 74, 80, 133
Hin1II CATG 1 cut(s) 226
HpaII CCGG 3 cut(s) 74, 80, 133
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 25, 87, 229
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 14, 34, 108
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 76, 129
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 1 cut(s) 226
KroI GCCGGC 1 cut(s) 132
KroNI GCCGGC 1 cut(s) 134
Kzo9I GATC 5 cut(s) 16, 36, 40, 82, 189
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 47, 87, 93, 113, 140, 146, 185, 204
Lsp1109I GCAGC 1 cut(s) 57
MaeI CTAG 2 cut(s) 101, 239
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 18, 38, 42, 84, 191
MboI GATC 5 cut(s) 16, 36, 40, 82, 189
MhlI GDGCHC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 4 cut(s) 59, 62, 134, 135
Mox20I TGGCCA 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 3 cut(s) 74, 80, 133
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 11, 76, 129
NaeI GCCGGC 1 cut(s) 134
NdeII GATC 5 cut(s) 16, 36, 40, 82, 189
NgoMIV GCCGGC 1 cut(s) 132
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 130, 144
RsaI GTAC 2 cut(s) 9, 29
RsaNI GTAC 2 cut(s) 8, 28
SacI GAGCTC 1 cut(s) 98
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 5 cut(s) 16, 36, 40, 82, 189
Sau96I GGNCC 2 cut(s) 130, 144
ScaI AGTACT 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 98
SetI ASST 7 cut(s) 72, 98, 146, 156, 184, 201, 244
SinI GGWCC 1 cut(s) 144
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 112
SspMI CTAG 2 cut(s) 101, 239
SstI GAGCTC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 2 cut(s) 39, 54
TaqII GACCGA 1 cut(s) 9
TasI AATT 1 cut(s) 57
TatI WGTACW 2 cut(s) 7, 27
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 226
XspI CTAG 2 cut(s) 101, 239
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.