Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0019427

Physical Location & Seq

Genomic Coordinates Forward (+)

101532 .. 101753

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgcggatactgaggtcacatggcggcttcaaagtctcaatgtttgagtccaatcactccaaggttgggctgcaccacatcgtcaccgcctgcagagccgtggtgctgccgcccttcggggggcccgaggttctggagctccggcccattgtcgacgttcctgatctcacgcccaacgaggtcctcgttagcactcgcaccgtctcaatcaatcccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

73

Amino Acids

7.98

Weight (kDa)

8.04

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031981
rosa_laevigata	RLG00000031411
rosa_multiflora	Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha	Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	4 cut(s)	4, 24, 87, 110
AfiI	CCNNNNNNNGG	4 cut(s)	66, 116, 119, 120
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	40, 208
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	122, 143
ApaI	GGGCCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	70, 106
AspS9I	GGNCC	4 cut(s)	122, 123, 144, 181
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	126
BaeI	ACNNNNGTAYC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	126, 141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	57, 93
BceAI	ACGGC	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	40, 208
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	4 cut(s)	25, 71, 107, 110
BlsI	GCNGC	4 cut(s)	26, 72, 108, 111
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	4 cut(s)	122, 123, 144, 181
BmiI	GGNNCC	2 cut(s)	123, 124
BpmI	CTGGAG	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	60, 99, 126
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 116, 119, 120
BseDI	CCNNGG	3 cut(s)	60, 99, 126
BseLI	CCNNNNNNNGG	4 cut(s)	66, 116, 119, 120
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	57, 93
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	124, 145
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	4 cut(s)	66, 116, 119, 120
BsmAI	GTCTC	2 cut(s)	40, 208
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	124, 145
BsoBI	CYCGRG	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	126, 141
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	4 cut(s)	4, 24, 87, 110
BspANI	GGCC	2 cut(s)	124, 145
BspLI	GGNNCC	2 cut(s)	123, 124
BspMAI	CTGCAG	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	60, 99, 126
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	40, 208
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	57, 93
BsuRI	GGCC	2 cut(s)	124, 145
BtgI	CCRYGG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	122, 123, 144, 181
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	27, 70, 98, 124, 139, 145
CviKI_1	RGCY	6 cut(s)	27, 70, 98, 124, 139, 145
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	126, 141
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	122, 181
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	126, 141
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	1 cut(s)	23
FaiI	YATR	1 cut(s)	21
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	25, 71, 107, 110
FriOI	GRGCYC	2 cut(s)	126, 141
Fsp4HI	GCNGC	4 cut(s)	25, 71, 107, 110
GluI	GCNGC	4 cut(s)	25, 71, 107, 110
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	124, 145
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	134, 161
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	73, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	136, 144
LpnPI	CCDG	4 cut(s)	103, 119, 155, 174
Lsp1109I	GCAGC	2 cut(s)	57, 93
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	15, 82
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	126, 141
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	6, 121, 172, 194
MspI	CCGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	123, 124
NmuCI	GTSAC	2 cut(s)	15, 82
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 183
PkrI	GCNGC	4 cut(s)	26, 72, 108, 111
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	123, 124
PspOMI	GGGCCC	1 cut(s)	122
PspPI	GGNCC	4 cut(s)	122, 123, 144, 181
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	152
SatI	GCNGC	4 cut(s)	25, 71, 107, 110
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	4 cut(s)	122, 123, 144, 181
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	126, 141
SetI	ASST	6 cut(s)	17, 66, 132, 141, 159, 183
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	181
SsiI	CCGC	4 cut(s)	4, 24, 87, 110
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	2 cut(s)	27, 112
TseFI	GTSAC	2 cut(s)	15, 82
TseI	GCWGC	2 cut(s)	70, 106
Tsp45I	GTSAC	2 cut(s)	15, 82
VpaK11BI	GGWCC	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.