Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019427

Physical Location & Seq

Genomic Coordinates Forward (+)

26049379 .. 26050855

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG247300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGGCTTCAAAGTCTCAATGTTTGAGTCCAATCACTCCAAGGTTGGGCTGCACCACATCGTCACTGGCCGCCTGCAGAGCCGTGGTGCTGCCGCCCTTCGGGGCGCCCGAGGTTCTGGAGCTCCGGCCCATTGTCGACGTTCCTGATCTCAAGCCCAATGAGGTCCTCGTTAGCACTCGCGCCGTTTCAATCAATCCCCTTGATACCAAAAGTACTGGTGGACCTTCGATCATGAGAGCAGATTCGGAAGGGTTACATGAGATCCGGAGGCTATCTGAAGCTCGAAAGTTAAACATACCTGTGGAGAAAACATTTCCCATCACTCAAGTGATAGAGGCACATGAGGCAAAGGAGAAGAAGCAGATTTATGTATATAAAAGCGAATGGCAACTATTTCCACATAATCTGTTCCAACTGTTGACAGCCTGTGAAGACTTTATTGAACTCTTTTTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

153

Amino Acids

16.97

Weight (kDa)

6.3

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031981
rosa_laevigata	RLG00000031411
rosa_multiflora	Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha	Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	3 cut(s)	5, 72, 95
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	47, 101
AgsI	TTSAA	3 cut(s)	12, 192, 446
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	124, 284
AluI	AGCT	2 cut(s)	124, 284
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	2 cut(s)	69, 128
ApeKI	GCWGC	2 cut(s)	51, 91
AspLEI	GCGC	2 cut(s)	109, 185
AspS9I	GGNCC	3 cut(s)	129, 166, 224
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	166, 224
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	38, 78
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	68, 170
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	5 cut(s)	6, 52, 72, 92, 95
BlsI	GCNGC	5 cut(s)	7, 53, 73, 93, 96
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	166, 224
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	129, 166, 224
BmiI	GGNNCC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	137, 312
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	41, 84, 111
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 101
Bse1I	ACTGG	2 cut(s)	72, 223
BseAI	TCCGGA	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	41, 84, 111
BseLI	CCNNNNNNNGG	2 cut(s)	47, 101
BseNI	ACTGG	2 cut(s)	72, 223
BseXI	GCAGC	2 cut(s)	38, 78
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	71, 130
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	127, 268
BslI	CCNNNNNNNGG	2 cut(s)	47, 101
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	71, 130
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	148, 231, 264
BspACI	CCGC	3 cut(s)	5, 72, 95
BspANI	GGCC	2 cut(s)	71, 130
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	72, 223
BssECI	CCNNGG	3 cut(s)	41, 84, 111
BssMI	GATC	3 cut(s)	148, 231, 264
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	2 cut(s)	109, 185
BstKTI	GATC	3 cut(s)	151, 234, 267
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	148, 231, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 347
BstSFI	CTRYAG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	38, 78
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	71, 130
BtgI	CCRYGG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	2 cut(s)	109, 185
Cfr13I	GGNCC	3 cut(s)	129, 166, 224
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	235, 260, 344
CviQI	GTAC	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	3 cut(s)	150, 233, 266
DpnII	GATC	3 cut(s)	148, 231, 264
EaeI	YGGCCR	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	166, 224
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	238, 263, 347
FaiI	YATR	9 cut(s)	236, 261, 299, 345, 372, 376, 378, 405, 457
FatI	CATG	3 cut(s)	234, 259, 343
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	6, 52, 72, 92, 95
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	6, 52, 72, 92, 95
GlaI	GCGC	2 cut(s)	108, 184
GluI	GCNGC	5 cut(s)	6, 52, 72, 92, 95
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	71, 130
HapII	CCGG	2 cut(s)	127, 268
HhaI	GCGC	2 cut(s)	109, 185
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	238, 263, 347
Hin6I	GCGC	2 cut(s)	107, 183
HinP1I	GCGC	2 cut(s)	107, 183
HincII	GTYRAC	2 cut(s)	139, 423
HindII	GTYRAC	2 cut(s)	139, 423
HinfI	GANTC	2 cut(s)	28, 245
HpaII	CCGG	2 cut(s)	127, 268
Hpy166II	GTNNAC	3 cut(s)	139, 224, 423
Hpy188I	TCNGA	2 cut(s)	250, 280
Hpy188III	TCNNGA	4 cut(s)	119, 146, 235, 268
Hpy8I	GTNNAC	3 cut(s)	139, 224, 423
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	109, 237, 245
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	54, 78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 347
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	238, 263, 347
HspAI	GCGC	2 cut(s)	107, 183
KasI	GGCGCC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	148, 231, 264
LmnI	GCTCC	2 cut(s)	121, 129
LpnPI	CCDG	9 cut(s)	53, 88, 104, 140, 159, 204, 281, 315, 442
Lsp1109I	GCAGC	2 cut(s)	38, 78
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	63, 255
MalI	GATC	3 cut(s)	150, 233, 266
MboI	GATC	3 cut(s)	148, 231, 264
MboII	GAAGA	2 cut(s)	370, 446
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	106, 157, 179, 264, 331, 340
MroI	TCCGGA	1 cut(s)	267
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	2 cut(s)	302, 329
MspI	CCGG	2 cut(s)	127, 268
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	80, 347
NarI	GGCGCC	1 cut(s)	107
NdeII	GATC	3 cut(s)	148, 231, 264
NlaIII	CATG	3 cut(s)	238, 263, 347
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	63
OliI	CACNNNNGTG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	7, 53, 73, 93, 96
PleI	GAGTC	1 cut(s)	36
PluTI	GGCGCC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	129, 166, 224
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	302, 329
SacI	GAGCTC	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	5 cut(s)	6, 52, 72, 92, 95
Sau3AI	GATC	3 cut(s)	148, 231, 264
Sau96I	GGNCC	3 cut(s)	129, 166, 224
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	8 cut(s)	47, 117, 126, 144, 168, 229, 286, 304
SfcI	CTRYAG	1 cut(s)	76
SfoI	GGCGCC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	166, 224
SmiMI	CAYNNNNRTG	2 cut(s)	302, 329
SmlI	CTYRAG	2 cut(s)	152, 327
SmoI	CTYRAG	2 cut(s)	152, 327
SsiI	CCGC	3 cut(s)	5, 72, 95
SspDI	GGCGCC	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	3 cut(s)	138, 230, 286
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	3 cut(s)	8, 74, 97
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	2 cut(s)	51, 91
Tsp45I	GTSAC	1 cut(s)	63
TspRI	CASTG	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	166, 224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.