Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0019427

Physical Location & Seq

Genomic Coordinates Forward (+)

26372 .. 26608

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggcggcttcaaagtctcaatctttgagtccaatcactccaaggttgggctgcaacatcatcaccgcctgcagagccgtggtgctgccgcgcttcggcaggcctgaggtcctggagctccggcccattgtcgacgttcctgatctcaagcccaatgaggtcctcgttcgcactcgcgccgtctcatctctttgcaaaattgattctctcttaacttctgtttggttgctcccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

78

Amino Acids

8.52

Weight (kDa)

9.49

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031981
rosa_laevigata	RLG00000031411
rosa_multiflora	Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha	Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	91, 177
AciI	CCGC	3 cut(s)	5, 66, 89
AfiI	CCNNNNNNNGG	2 cut(s)	47, 95
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	21, 187
AoxI	GGCC	2 cut(s)	101, 122
ApeKI	GCWGC	2 cut(s)	51, 85
AspLEI	GCGC	2 cut(s)	93, 179
AspS9I	GGNCC	3 cut(s)	109, 123, 160
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	109, 160
AxyI	CCTNAGG	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	38, 72
BceAI	ACGGC	2 cut(s)	62, 164
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	21, 187
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	4 cut(s)	6, 52, 86, 89
BlsI	GCNGC	4 cut(s)	7, 53, 87, 90
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	109, 160
BmgT120I	GGNCC	3 cut(s)	109, 123, 160
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	41, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 95
Bse21I	CCTNAGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	41, 78
BseLI	CCNNNNNNNGG	2 cut(s)	47, 95
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	38, 72
Bsh1236I	CGCG	2 cut(s)	91, 177
BshFI	GGCC	2 cut(s)	103, 124
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	47, 95
BsmAI	GTCTC	2 cut(s)	21, 187
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	103, 124
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	5, 66, 89
BspANI	GGCC	2 cut(s)	103, 124
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	91, 177
BspMAI	CTGCAG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	41, 78
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	70, 101
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	78
BstFNI	CGCG	2 cut(s)	91, 177
BstHHI	GCGC	2 cut(s)	93, 179
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	21, 187
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	2 cut(s)	91, 177
BstV1I	GCAGC	2 cut(s)	38, 72
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	103, 124
BtgI	CCRYGG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	70, 101
CfoI	GCGC	2 cut(s)	93, 179
Cfr13I	GGNCC	3 cut(s)	109, 123, 160
CviJI	RGCY	7 cut(s)	8, 51, 77, 103, 118, 124, 151
CviKI_1	RGCY	7 cut(s)	8, 51, 77, 103, 118, 124, 151
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	109, 160
Eco53kI	GAGCTC	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	109, 160
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	6, 52, 86, 89
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	4 cut(s)	6, 52, 86, 89
GlaI	GCGC	2 cut(s)	92, 178
GluI	GCNGC	4 cut(s)	6, 52, 86, 89
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	103, 124
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	2 cut(s)	93, 179
Hin6I	GCGC	2 cut(s)	91, 177
HinP1I	GCGC	2 cut(s)	91, 177
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	28, 203
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	54, 72, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	2 cut(s)	91, 177
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	115, 123, 234
LpnPI	CCDG	7 cut(s)	82, 85, 98, 117, 125, 134, 153
Lsp1109I	GCAGC	2 cut(s)	38, 72
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	100, 151, 173
MseI	TTAA	1 cut(s)	212
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	91, 177
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	7, 53, 87, 90
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	2 cut(s)	109, 160
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	2 cut(s)	109, 160
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	3 cut(s)	109, 123, 160
PspPPI	RGGWCCY	2 cut(s)	109, 160
PstI	CTGCAG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	4 cut(s)	6, 52, 86, 89
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	3 cut(s)	109, 123, 160
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	5 cut(s)	47, 111, 120, 138, 162
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	109, 160
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	5, 66, 89
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	41
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	198
TauI	GCSGC	2 cut(s)	8, 91
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseI	GCWGC	2 cut(s)	51, 85
VpaK11BI	GGWCC	2 cut(s)	109, 160
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.