Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0019427

Physical Location & Seq

Genomic Coordinates Forward (+)

147514 .. 148710

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggttgtacttgcagatcggtcggagtacttgcagattgatcaaatcctcctcgaaattctggccaagctgctgaagcaggatcagaagccgagctcgctggcctgcaagcggtggctgagcctccagggccggcttgtgaggtccatgaaggtgaaagactggagctttgtggagtcgggtcgggttatttcaagctttgtggaatcgaatggcgacgagaacgttggagtggctagagctccgactggagcttcttcgtcgtcttcaggtttggactgcatcttcggcgcggcgatcgtagagagagagagagagtggttcacccactccctgaggtcacatggcagcttcaaagtctcaatctttgagtcccatcacttcaaggttgggctgtgccacatcgccaccgcctgcagagccgtggtgctgccgcgcttcggtgggcctgaggtcctggagctccggcccattgtcgacgttcctgatctcaagcccaatgaggtcctcgttcgcactcgcgccgtctcaatcaatccccttgataccagagtcagtctcatctctttcttaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

192

Amino Acids

21.3

Weight (kDa)

8.76

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031981
rosa_laevigata	RLG00000031411
rosa_multiflora	Rmu_sc0003031.1_g000007 Rmu_sc0003031.1_g000025 Rmu_sc0003031.1_g000044
rosa_samantha	Rh1BG274300 Rh1DG305100 Rh5CG247300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	3 cut(s)	293, 436, 522
AciI	CCGC	4 cut(s)	112, 293, 411, 434
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	95, 252
AfaI	GTAC	2 cut(s)	9, 29
AfiI	CCNNNNNNNGG	2 cut(s)	111, 440
AgsI	TTSAA	3 cut(s)	195, 355, 385
AjnI	CCWGG	2 cut(s)	126, 456
AluBI	AGCT	8 cut(s)	70, 96, 168, 198, 242, 254, 351, 463
AluI	AGCT	8 cut(s)	70, 96, 168, 198, 242, 254, 351, 463
Alw21I	GWGCWC	3 cut(s)	98, 244, 465
Alw26I	GTCTC	3 cut(s)	364, 532, 563
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	5 cut(s)	63, 102, 130, 446, 467
ApeKI	GCWGC	3 cut(s)	70, 348, 430
ApoI	RAATTY	1 cut(s)	57
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 269, 301
AspLEI	GCGC	3 cut(s)	293, 438, 524
AspS9I	GGNCC	6 cut(s)	130, 144, 446, 454, 468, 505
AsuHPI	GGTGA	2 cut(s)	166, 316
AvaII	GGWCC	3 cut(s)	144, 454, 505
AxyI	CCTNAGG	2 cut(s)	335, 450
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	3 cut(s)	98, 244, 465
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	3 cut(s)	98, 244, 465
BbvI	GCAGC	3 cut(s)	57, 360, 417
BccI	CCATC	1 cut(s)	384
BceAI	ACGGC	2 cut(s)	407, 509
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	128, 458
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	364, 532, 563
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	415
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	71, 294, 349, 431, 434
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	5 cut(s)	72, 295, 350, 432, 435
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	128, 458
Bme18I	GGWCC	3 cut(s)	144, 454, 505
BmgT120I	GGNCC	6 cut(s)	130, 144, 446, 454, 468, 505
BmrFI	CCNGG	2 cut(s)	128, 458
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	543, 575
BpmI	CTGGAG	4 cut(s)	110, 184, 270, 479
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	127, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 440
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	167, 253
Bse21I	CCTNAGG	2 cut(s)	335, 450
BseBI	CCWGG	2 cut(s)	128, 458
BseDI	CCNNGG	2 cut(s)	127, 423
BseLI	CCNNNNNNNGG	2 cut(s)	111, 440
BseMII	CTCAG	3 cut(s)	110, 326, 441
BseNI	ACTGG	2 cut(s)	167, 253
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	57, 360, 417
Bsh1236I	CGCG	3 cut(s)	293, 436, 522
Bsh1285I	CGRYCG	2 cut(s)	23, 300
BshFI	GGCC	5 cut(s)	65, 104, 132, 448, 469
BsiEI	CGRYCG	2 cut(s)	23, 300
BsiHKAI	GWGCWC	3 cut(s)	98, 244, 465
BsiSI	CCGG	2 cut(s)	133, 466
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	111, 440
BsmAI	GTCTC	3 cut(s)	364, 532, 563
BsmBI	CGTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	5 cut(s)	65, 104, 132, 448, 469
Bsp1286I	GDGCHC	3 cut(s)	98, 244, 465
Bsp143I	GATC	5 cut(s)	16, 40, 82, 297, 487
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	4 cut(s)	112, 293, 411, 434
BspANI	GGCC	5 cut(s)	65, 104, 132, 448, 469
BspCNI	CTCAG	3 cut(s)	111, 327, 442
BspFNI	CGCG	3 cut(s)	293, 436, 522
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	167, 253
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	127, 423
BssMI	GATC	5 cut(s)	16, 40, 82, 297, 487
Bst2UI	CCWGG	2 cut(s)	128, 458
BstC8I	GCNNGC	6 cut(s)	98, 102, 106, 110, 134, 415
BstDEI	CTNAG	3 cut(s)	119, 335, 450
BstDSI	CCRYGG	1 cut(s)	423
BstFNI	CGCG	3 cut(s)	293, 436, 522
BstHHI	GCGC	3 cut(s)	293, 438, 524
BstKTI	GATC	5 cut(s)	19, 43, 85, 300, 490
BstMAI	GTCTC	3 cut(s)	364, 532, 563
BstMBI	GATC	5 cut(s)	16, 40, 82, 297, 487
BstMCI	CGRYCG	2 cut(s)	23, 300
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 97, 129, 288, 419
BstNI	CCWGG	2 cut(s)	128, 458
BstSCI	CCNGG	2 cut(s)	126, 456
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	3 cut(s)	293, 436, 522
BstV1I	GCAGC	3 cut(s)	57, 360, 417
BstV2I	GAAGAC	1 cut(s)	258
Bsu36I	CCTNAGG	2 cut(s)	335, 450
BsuRI	GGCC	5 cut(s)	65, 104, 132, 448, 469
BtgI	CCRYGG	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	388
Cac8I	GCNNGC	6 cut(s)	98, 102, 106, 110, 134, 415
CfoI	GCGC	3 cut(s)	293, 438, 524
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	6 cut(s)	130, 144, 446, 454, 468, 505
Csp6I	GTAC	2 cut(s)	8, 28
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	2 cut(s)	148, 344
CviQI	GTAC	2 cut(s)	8, 28
DdeI	CTNAG	3 cut(s)	119, 335, 450
DpnI	GATC	5 cut(s)	18, 42, 84, 299, 489
DpnII	GATC	5 cut(s)	16, 40, 82, 297, 487
EaeI	YGGCCR	1 cut(s)	63
Ecl136II	GAGCTC	3 cut(s)	96, 242, 463
Eco24I	GRGCYC	3 cut(s)	98, 244, 465
Eco47I	GGWCC	3 cut(s)	144, 454, 505
Eco53kI	GAGCTC	3 cut(s)	96, 242, 463
Eco57I	CTGAAG	2 cut(s)	95, 252
Eco81I	CCTNAGG	2 cut(s)	335, 450
EcoICRI	GAGCTC	3 cut(s)	96, 242, 463
EcoO109I	RGGNCCY	2 cut(s)	454, 505
EcoRII	CCWGG	2 cut(s)	126, 456
EcoT38I	GRGCYC	3 cut(s)	98, 244, 465
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	2 cut(s)	151, 347
FaiI	YATR	2 cut(s)	149, 345
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	147, 343
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	5 cut(s)	71, 294, 349, 431, 434
FriOI	GRGCYC	3 cut(s)	98, 244, 465
Fsp4HI	GCNGC	5 cut(s)	71, 294, 349, 431, 434
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	3 cut(s)	292, 437, 523
GluI	GCNGC	5 cut(s)	71, 294, 349, 431, 434
GsuI	CTGGAG	4 cut(s)	110, 184, 270, 479
HaeIII	GGCC	5 cut(s)	65, 104, 132, 448, 469
HapII	CCGG	2 cut(s)	133, 466
HhaI	GCGC	3 cut(s)	293, 438, 524
Hin1II	CATG	2 cut(s)	151, 347
Hin6I	GCGC	3 cut(s)	291, 436, 522
HinP1I	GCGC	3 cut(s)	291, 436, 522
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	4 cut(s)	176, 206, 371, 552
HpaII	CCGG	2 cut(s)	133, 466
HphI	GGTGA	2 cut(s)	166, 316
Hpy166II	GTNNAC	2 cut(s)	324, 478
Hpy188I	TCNGA	3 cut(s)	25, 87, 246
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	2 cut(s)	324, 478
Hpy99I	CGWCG	3 cut(s)	221, 265, 482
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	225, 480
HpyCH4V	TGCA	5 cut(s)	14, 34, 108, 282, 417
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 97, 129, 288, 419
HpyF3I	CTNAG	3 cut(s)	119, 335, 450
HpySE526I	ACGT	2 cut(s)	225, 480
Hsp92II	CATG	2 cut(s)	151, 347
HspAI	GCGC	3 cut(s)	291, 436, 522
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	16, 40, 82, 297, 487
LmnI	GCTCC	5 cut(s)	165, 247, 251, 460, 468
Lsp1109I	GCAGC	3 cut(s)	57, 360, 417
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	225, 480
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	5 cut(s)	18, 42, 84, 299, 489
MboI	GATC	5 cut(s)	16, 40, 82, 297, 487
MboII	GAAGA	3 cut(s)	249, 258, 277
MhlI	GDGCHC	3 cut(s)	98, 244, 465
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	57, 574
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	3 cut(s)	185, 380, 561
MmeI	TCCRAC	2 cut(s)	208, 269
MnlI	CCTC	8 cut(s)	59, 62, 134, 135, 330, 445, 496, 518
Mox20I	TGGCCA	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	133, 466
MspR9I	CCNGG	2 cut(s)	128, 458
MvaI	CCWGG	2 cut(s)	128, 458
MvnI	CGCG	3 cut(s)	293, 436, 522
MwoI	GCNNNNNNNGC	5 cut(s)	76, 97, 129, 288, 419
NaeI	GCCGGC	1 cut(s)	134
NdeII	GATC	5 cut(s)	16, 40, 82, 297, 487
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	151, 347
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	72, 295, 350, 432, 435
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	3 cut(s)	184, 379, 560
PpsI	GAGTC	3 cut(s)	184, 379, 560
PpuMI	RGGWCCY	2 cut(s)	454, 505
Psp124BI	GAGCTC	3 cut(s)	98, 244, 465
Psp1406I	AACGTT	1 cut(s)	225
Psp5II	RGGWCCY	2 cut(s)	454, 505
Psp6I	CCWGG	2 cut(s)	126, 456
PspGI	CCWGG	2 cut(s)	126, 456
PspPI	GGNCC	6 cut(s)	130, 144, 446, 454, 468, 505
PspPPI	RGGWCCY	2 cut(s)	454, 505
PstI	CTGCAG	1 cut(s)	419
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	9, 29
RsaNI	GTAC	2 cut(s)	8, 28
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	3 cut(s)	98, 244, 465
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	5 cut(s)	71, 294, 349, 431, 434
Sau3AI	GATC	5 cut(s)	16, 40, 82, 297, 487
Sau96I	GGNCC	6 cut(s)	130, 144, 446, 454, 468, 505
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	3 cut(s)	185, 380, 561
ScrFI	CCNGG	2 cut(s)	128, 458
SduI	GDGCHC	3 cut(s)	98, 244, 465
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	3 cut(s)	144, 454, 505
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	57, 574
SsiI	CCGC	4 cut(s)	112, 293, 411, 434
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	3 cut(s)	98, 244, 465
StyD4I	CCNGG	2 cut(s)	126, 456
TaiI	ACGT	2 cut(s)	228, 483
TaqI	TCGA	3 cut(s)	54, 209, 477
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	2 cut(s)	57, 574
TatI	WGTACW	2 cut(s)	7, 27
TauI	GCSGC	2 cut(s)	296, 436
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	3 cut(s)	70, 348, 430
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	144, 454, 505
XapI	RAATTY	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.