RchiOBHm_Chr5g0039361

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016746
Physical Location & Seq
Reverse (-)
34027186 .. 34029717
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 954 bp
ATGTACGTTCTGTCTTTGGTTTTGGTCAGTCTAATGGAAAATAGTGGAAGCAGTTCAATTTTAAGGAATAGGAGCTTTTTGAACACAAGCTCTGGTCCAACTGCAGAAGGAGCATCTAAAATTTTGGAGAAGGATGTAGGACAGAAGTTGAGGCGTCTCGAAGTTGATGTCAATGAAGATGGTTTTGGTTCCAAACTGATATCTTGTGTAAGAATTGTTACGTGTTTCGTTACGATGATGGTTACTACTTTGATATGGGCTTTGATTATGCTTGTGCTCCTACCTTGGCCTTATGAGAGGATTAGGCAAGGAAATGTGTATGGACATGTTACTGGTAGATTGATGATGCGGATTTTAGGGAATCCTGTACAGATCGAAGGAGCTGAATTCGCTAATAAGAGGGCAATTTTTATCAGTAATCATGCTTCTCCTTTAGATATTTTCCCTATCATGTGGTTGACTCCCACAGGCACTGTCGGTATTGCGAAAAAGGAGGTCATATGGTATCCCCTATTTGGACAACTTTATGTACTGGCCAACCATCTTCGCATAGATCGCTCCAATCCAACAGCAGCCATTGAATCTCTGAAAGAGGCAGCTCAGGCAGTCGTGAGAAAAAAACTTTCTTTGATCATCTTTCCTGAGGGCACCAGGTCAGCAGATGGAAGACTACTCCCTTTTAAAAAGGGCTTTATTCATCTGGCATTACAAACACGCCTCCCAATAGTTCCCATTGTCCTTATAGGTACCCATCGAGCATGGAGGAAGGGTAGCTTACGCGTTCGACCAACACCTTTAACAATAAAGTATCTTTCTCCAATAAGCACTGATGATTGGACAGCTGATAAAATTGATGAATACATTCGAATGTTACATGACTTGTATGTCCAACACCTCCCAGACTCACAGAGGCCTCTTGCATTAGCAGAATCCACAAATGGTACCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

317

Amino Acids

35.5

Weight (kDa)

9.79

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 124 - 247 4e-31 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc65I GGTACC 2 cut(s) 746, 941
AccB1I GGYRCC 3 cut(s) 647, 746, 941
AccII CGCG 1 cut(s) 780
AciI CCGC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 2 cut(s) 120, 386
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 5 cut(s) 5, 369, 531, 748, 943
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 3 cut(s) 221, 325, 778
AgsI TTSAA 3 cut(s) 57, 82, 581
AjnI CCWGG 1 cut(s) 650
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 75, 90, 383, 599, 774, 842
AluI AGCT 6 cut(s) 75, 90, 383, 599, 774, 842
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 3 cut(s) 287, 534, 911
ApeKI GCWGC 2 cut(s) 572, 596
ApoI RAATTY 2 cut(s) 120, 386
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
Asp700I GAANNNNTTC 2 cut(s) 52, 861
Asp718I GGTACC 2 cut(s) 746, 941
AspS9I GGNCC 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 865
AvaII GGWCC 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 650
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 3 cut(s) 647, 746, 941
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbsI GAAGAC 1 cut(s) 673
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 584, 608
BccI CCATC 5 cut(s) 173, 232, 549, 656, 759
BciT130I CCWGG 1 cut(s) 652
BciVI GTATCC 1 cut(s) 516
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 2 cut(s) 573, 597
BlsI GCNGC 2 cut(s) 574, 598
Bme1390I CCNGG 1 cut(s) 652
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 4 cut(s) 190, 649, 748, 943
BmrFI CCNGG 1 cut(s) 652
BmsI GCATC 2 cut(s) 122, 336
BpiI GAAGAC 1 cut(s) 673
Bpu10I CCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 754, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 2 cut(s) 337, 537
Bse21I CCTNAGG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 652
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 614, 633
BseNI ACTGG 2 cut(s) 337, 537
BseSI GKGCMC 1 cut(s) 650
BseXI GCAGC 2 cut(s) 584, 608
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 3 cut(s) 289, 536, 913
BshNI GGYRCC 3 cut(s) 647, 746, 941
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsnI GGCC 3 cut(s) 289, 536, 913
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 279, 650
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 372, 553, 630
BspACI CCGC 1 cut(s) 349
BspANI GGCC 3 cut(s) 289, 536, 913
BspCNI CTCAG 2 cut(s) 613, 634
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 190, 649, 748, 943
BspMAI CTGCAG 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 865
BspT107I GGYRCC 3 cut(s) 647, 746, 941
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 2 cut(s) 337, 537
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 3 cut(s) 372, 553, 630
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 652
Bst4CI ACNGT 1 cut(s) 475
BstACI GRCGYC 1 cut(s) 154
BstAUI TGTACA 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 865
BstDEI CTNAG 2 cut(s) 600, 642
BstF5I GGATG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 780
BstKTI GATC 3 cut(s) 375, 556, 633
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 372, 553, 630
BstMWI GCNNNNNNNGC 4 cut(s) 110, 389, 555, 602
BstNI CCWGG 1 cut(s) 652
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 650
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 650
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 2 cut(s) 584, 608
BstV2I GAAGAC 1 cut(s) 673
Bsu36I CCTNAGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 3 cut(s) 289, 536, 913
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 471, 825
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 143
CsiI ACCWGGT 1 cut(s) 650
Csp6I GTAC 5 cut(s) 4, 368, 530, 747, 942
CviAII CATG 5 cut(s) 326, 422, 451, 759, 875
CviQI GTAC 5 cut(s) 4, 368, 530, 747, 942
DdeI CTNAG 2 cut(s) 600, 642
DpnI GATC 3 cut(s) 374, 555, 632
DpnII GATC 3 cut(s) 372, 553, 630
DraI TTTAAA 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 913
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 650
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 5 cut(s) 329, 425, 454, 762, 878
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FatI CATG 5 cut(s) 325, 421, 450, 758, 874
FauNDI CATATG 1 cut(s) 500
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 2 cut(s) 573, 597
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 573, 597
GluI GCNGC 2 cut(s) 573, 597
HaeIII GGCC 3 cut(s) 289, 536, 913
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 5 cut(s) 329, 425, 454, 762, 878
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 5 cut(s) 361, 460, 581, 902, 929
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 1 cut(s) 588
Hpy188III TCNNGA 3 cut(s) 158, 610, 641
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 4 cut(s) 101, 124, 371, 760
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 6, 221
HpyCH4V TGCA 2 cut(s) 104, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 389, 555, 602
HpyF3I CTNAG 2 cut(s) 600, 642
HpySE526I ACGT 2 cut(s) 6, 221
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 5 cut(s) 329, 425, 454, 762, 878
KpnI GGTACC 2 cut(s) 750, 945
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 3 cut(s) 372, 553, 630
LmnI GCTCC 5 cut(s) 72, 110, 282, 380, 563
Lsp1109I GCAGC 2 cut(s) 584, 608
LweI GCATC 2 cut(s) 122, 336
MabI ACCWGGT 1 cut(s) 650
MaeII ACGT 2 cut(s) 6, 221
MaeIII GTNAC 5 cut(s) 217, 229, 241, 328, 870
MalI GATC 3 cut(s) 374, 555, 632
MboI GATC 3 cut(s) 372, 553, 630
MboII GAAGA 3 cut(s) 188, 536, 678
MhlI GDGCHC 2 cut(s) 279, 650
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 6 cut(s) 57, 120, 213, 386, 405, 849
MluI ACGCGT 1 cut(s) 778
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 454, 896
MmeI TCCRAC 3 cut(s) 122, 590, 913
Mox20I TGGCCA 1 cut(s) 536
MroXI GAANNNNTTC 2 cut(s) 52, 861
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 62, 681, 797
MslI CAYNNNNRTG 1 cut(s) 866
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 652
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 110, 389, 555, 602
NdeI CATATG 1 cut(s) 500
NdeII GATC 3 cut(s) 372, 553, 630
NlaIII CATG 5 cut(s) 329, 425, 454, 762, 878
NlaIV GGNNCC 4 cut(s) 190, 649, 748, 943
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 865
PceI AGGCCT 1 cut(s) 913
PciI ACATGT 1 cut(s) 325
PdmI GAANNNNTTC 2 cut(s) 52, 861
PfeI GAWTC 3 cut(s) 361, 581, 929
PkrI GCNGC 2 cut(s) 574, 598
PleI GAGTC 2 cut(s) 454, 896
PpsI GAGTC 2 cut(s) 454, 896
Ppu21I YACGTR 1 cut(s) 222
PscI ACATGT 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 650
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 4 cut(s) 190, 649, 748, 943
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 5 cut(s) 5, 369, 531, 748, 943
RsaNI GTAC 5 cut(s) 4, 368, 530, 747, 942
RseI CAYNNNNRTG 1 cut(s) 866
SaqAI TTAA 3 cut(s) 62, 681, 797
SatI GCNGC 2 cut(s) 573, 597
Sau3AI GATC 3 cut(s) 372, 553, 630
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 454, 896
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 2 cut(s) 279, 650
SexAI ACCWGGT 1 cut(s) 650
SfaNI GCATC 2 cut(s) 122, 336
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 865
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 866
Sse9I AATT 6 cut(s) 57, 120, 213, 386, 405, 849
SseBI AGGCCT 1 cut(s) 913
SsiI CCGC 1 cut(s) 349
StuI AGGCCT 1 cut(s) 913
StyD4I CCNGG 1 cut(s) 650
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 9, 224
TaqI TCGA 5 cut(s) 159, 375, 754, 784, 865
TasI AATT 6 cut(s) 57, 120, 213, 386, 405, 849
TatI WGTACW 2 cut(s) 367, 529
TfiI GAWTC 3 cut(s) 361, 581, 929
Tru1I TTAA 3 cut(s) 62, 681, 797
Tru9I TTAA 3 cut(s) 62, 681, 797
TscAI CASTG 2 cut(s) 478, 832
TseI GCWGC 2 cut(s) 572, 596
TspDTI ATGAA 3 cut(s) 189, 686, 870
TspRI CASTG 2 cut(s) 478, 832
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 2 cut(s) 120, 386
XceI RCATGY 1 cut(s) 329
XmnI GAANNNNTTC 2 cut(s) 52, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.