Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Forward (+)

39739367 .. 39739621

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGCCCTCAAGGTCAGATTTTTCTTCTTTTTTCTTTCTTTCTTTTTTCTTTCTTTCTTTTTGGTGGCCGTCGCTCACTGTCGAGTGGCTGCCGAACCAGGAAGAGCAGCGGGGGAAGGACTACTCGGTGCAGAAGATGATATTAGGGACGCACACCTCGGAAAAGGAGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

58

Amino Acids

6.97

Weight (kDa)

5.09

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	22 - 58	1.1e-11	Histone-binding protein RBBP4 or subunit C of CAF1 complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	88, 106
BanII	GRGCYC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	75, 118
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	89, 107
BlsI	GCNGC	2 cut(s)	90, 108
Bme1390I	CCNGG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	75, 118
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	75, 118
BsuRI	GGCC	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	75
CseI	GACGC	1 cut(s)	157
CviJI	RGCY	3 cut(s)	67, 88, 169
CviKI_1	RGCY	3 cut(s)	67, 88, 169
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	171
FaqI	GGGAC	1 cut(s)	160
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	89, 107
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	89, 107
GluI	GCNGC	2 cut(s)	89, 107
HaeIII	GGCC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	16, 160
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	2 cut(s)	83, 110
Lsp1109I	GCAGC	2 cut(s)	75, 118
MboII	GAAGA	3 cut(s)	15, 113, 145
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	172
MnlI	CCTC	2 cut(s)	16, 166
MspA1I	CMGCKG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	90, 108
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	96
SatI	GCNGC	2 cut(s)	89, 107
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	2 cut(s)	14, 158
SgeI	CNNG	7 cut(s)	21, 94, 109, 110, 122, 136, 169
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	172
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	88, 106
TspRI	CASTG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.