Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Reverse (-)

434501 .. 436112

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000095.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggagaggatcattccgatcgtcgttactgatgacaaaatttctaaactcactaccatgccctcaagagtagaaattgatgcaacggttaaggcaatgggtagttgtagttcaccaagagcggatggtttaaatgacgcattctttgttaactgttggtctgttgttgtggacgatgtatcgcaacccagcgccagttcgccggatctggcgaccaatctccactacgacaacatgctcttcgtcaaaatcgacgccgtctacgctgccgtcggatccctaggctacaagaagcttccggttcacatctccgaggctgccgaccacctcttcgctctcactgatctcacccatactgaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

121

Amino Acids

13.14

Weight (kDa)

4.78

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	4 cut(s)	17, 213, 270, 283
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	255
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
AlwI	GGATC	4 cut(s)	17, 213, 270, 283
ApeKI	GCWGC	2 cut(s)	266, 317
ApoI	RAATTY	1 cut(s)	39
ArsI	GACNNNNNNTTYG	4 cut(s)	128, 160, 314, 346
AspA2I	CCTAGG	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	105, 340
AvrII	CCTAGG	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	253, 304
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	242, 254
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	267, 318
BlnI	CCTAGG	1 cut(s)	280
BlsI	GCNGC	2 cut(s)	268, 319
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	280, 312
BsaWI	WCCGGW	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	280, 312
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	253, 304
BseYI	CCCAGC	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	203, 299
BsmI	GAATGC	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	9, 18, 205, 275, 343
BspACI	CCGC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	4 cut(s)	17, 213, 270, 283
BspQI	GCTCTTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	280, 312
BssMI	GATC	5 cut(s)	9, 18, 205, 275, 343
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	88, 155
Bst6I	CTCTTC	2 cut(s)	245, 335
BstACI	GRCGYC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	130
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	12, 21, 208, 278, 346
BstMBI	GATC	5 cut(s)	9, 18, 205, 275, 343
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	253, 304
BstX2I	RGATCY	2 cut(s)	205, 275
BstYI	RGATCY	2 cut(s)	205, 275
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	194
CseI	GACGC	2 cut(s)	146, 263
CviAII	CATG	2 cut(s)	58, 235
CviJI	RGCY	3 cut(s)	285, 295, 317
CviKI_1	RGCY	3 cut(s)	285, 295, 317
DpnI	GATC	5 cut(s)	11, 20, 207, 277, 345
DpnII	GATC	5 cut(s)	9, 18, 205, 275, 343
DraI	TTTAAA	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	245, 335
EarI	CTCTTC	2 cut(s)	245, 335
Eco130I	CCWWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	61, 238
FaiI	YATR	3 cut(s)	59, 236, 354
FatI	CATG	2 cut(s)	57, 234
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	267, 318
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	267, 318
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	267, 318
GsaI	CCCAGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	2 cut(s)	203, 299
HgaI	GACGC	2 cut(s)	146, 263
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	61, 238
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	293
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	203, 299
HphI	GGTGA	2 cut(s)	105, 340
Hpy166II	GTNNAC	5 cut(s)	113, 151, 172, 262, 304
Hpy188I	TCNGA	3 cut(s)	18, 275, 313
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	5 cut(s)	113, 151, 172, 262, 304
Hpy99I	CGWCG	3 cut(s)	26, 257, 275
HpyCH4III	ACNGT	2 cut(s)	88, 155
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	61, 238
HspAI	GCGC	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	9, 18, 205, 275, 343
LguI	GCTCTTC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	194, 202, 208, 216, 312
Lsp1109I	GCAGC	2 cut(s)	253, 304
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	5 cut(s)	11, 20, 207, 277, 345
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	5 cut(s)	9, 18, 205, 275, 343
MboII	GAAGA	2 cut(s)	232, 322
MflI	RGATCY	2 cut(s)	205, 275
MluCI	AATT	2 cut(s)	39, 75
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	73, 307, 338
MseI	TTAA	3 cut(s)	90, 131, 150
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	203, 299
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	5 cut(s)	9, 18, 205, 275, 343
NlaIII	CATG	2 cut(s)	61, 238
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	268, 319
Ple19I	CGATCG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	277
PsrI	GAACNNNNNNTAC	2 cut(s)	94, 126
PsuI	RGATCY	2 cut(s)	205, 275
PsyI	GACNNNGTC	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	90, 131, 150
SatI	GCNGC	2 cut(s)	267, 318
Sau3AI	GATC	5 cut(s)	9, 18, 205, 275, 343
SetI	ASST	2 cut(s)	297, 330
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	39, 75
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	88, 155
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	39, 75
Tru1I	TTAA	3 cut(s)	90, 131, 150
Tru9I	TTAA	3 cut(s)	90, 131, 150
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	2 cut(s)	266, 317
TspRI	CASTG	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.