Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Forward (+)

7708835 .. 7709425

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTCGAGCAGGTACAGTTGTCGTTGGAGGACGAGGAGAACGATGCTCGTAATTACGATGATGATAATCCGGAGGCTGGAGGTTTCGGCTGCGCTAATGGCAAGATTGAGAAAGATTTTGAATTTTTGAGGCGGAAGCATTGGAATGTCAATCAAGTTGTGAAATTTGAACAGTTTGAAAGAAATTCCACCGGTGTCGTCCCCGCCAATGCTCAGATCGATCATCTTCGAGGTACTTCAAATCCGATTTCTGCCAAAATCAGGTCTGGGTTGAATTTCCGATCTTTACCGGAAGATTCACAGGTTTGGATCTTGGATACGTCGAATTCGCCCAAATCGACGCTGTCTACGCCACCCTCGGATCCCAGGCTACAAGAATCTTCCGATTCATATCTCCAAGGCCGTCGATGGGTCCCTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

142

Amino Acids

15.98

Weight (kDa)

4.92

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	2 cut(s)	133, 204
AclWI	GGATC	3 cut(s)	317, 356, 369
AcsI	RAATTY	5 cut(s)	122, 164, 184, 274, 325
AfaI	GTAC	2 cut(s)	15, 235
AfiI	CCNNNNNNNGG	3 cut(s)	77, 261, 409
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	122, 170, 179, 240, 274
AjnI	CCWGG	1 cut(s)	365
AlwI	GGATC	3 cut(s)	317, 356, 369
Ama87I	CYCGRG	1 cut(s)	5
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	5 cut(s)	122, 164, 184, 274, 325
AsiGI	ACCGGT	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	412
BaeI	ACNNNNGTAYC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	367
BciVI	GTATCC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	363, 413, 414
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	219
BsaBI	GATNNNNATC	2 cut(s)	66, 390
BsaJI	CCNNGG	3 cut(s)	357, 365, 397
BsaWI	WCCGGW	3 cut(s)	70, 191, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 261, 409
Bse118I	RCCGGY	1 cut(s)	191
Bse8I	GATNNNNATC	2 cut(s)	66, 390
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	357, 365, 397
BseJI	GATNNNNATC	2 cut(s)	66, 390
BseLI	CCNNNNNNNGG	3 cut(s)	77, 261, 409
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	402
BshTI	ACCGGT	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	71, 192, 290
BslFI	GGGAC	2 cut(s)	185, 398
BslI	CCNNNNNNNGG	3 cut(s)	77, 261, 409
BsmFI	GGGAC	2 cut(s)	185, 398
BsnI	GGCC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	216, 220, 281, 309, 361
BspACI	CCGC	2 cut(s)	133, 204
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	363, 413, 414
BspPI	GGATC	3 cut(s)	317, 356, 369
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	357, 365, 397
BssMI	GATC	5 cut(s)	216, 220, 281, 309, 361
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	18, 174
BstDEI	CTNAG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	5 cut(s)	219, 223, 284, 312, 364
BstMBI	GATC	5 cut(s)	216, 220, 281, 309, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 349
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	309, 361
BstYI	RGATCY	2 cut(s)	309, 361
Bsu15I	ATCGAT	1 cut(s)	219
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	219
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	14, 234
CspAI	ACCGGT	1 cut(s)	191
CviJI	RGCY	4 cut(s)	77, 90, 370, 402
CviKI_1	RGCY	4 cut(s)	77, 90, 370, 402
CviQI	GTAC	2 cut(s)	14, 234
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	5 cut(s)	218, 222, 283, 311, 363
DpnII	GATC	5 cut(s)	216, 220, 281, 309, 361
EciI	GGCGGA	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaiI	YATR	1 cut(s)	391
FaqI	GGGAC	2 cut(s)	185, 398
FauI	CCCGC	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	3 cut(s)	71, 192, 290
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	296, 377, 386
HpaII	CCGG	3 cut(s)	71, 192, 290
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	5 cut(s)	216, 246, 281, 361, 385
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	3 cut(s)	325, 343, 408
HpyCH4III	ACNGT	2 cut(s)	18, 174
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 349
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	320
HspAI	GCGC	1 cut(s)	93
KflI	GGGWCCC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	216, 220, 281, 309, 361
LpnPI	CCDG	9 cut(s)	63, 84, 205, 247, 252, 287, 303, 352, 379
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	320
MalI	GATC	5 cut(s)	218, 222, 283, 311, 363
MboI	GATC	5 cut(s)	216, 220, 281, 309, 361
MboII	GAAGA	3 cut(s)	218, 305, 372
MflI	RGATCY	2 cut(s)	309, 361
MluCI	AATT	6 cut(s)	52, 122, 164, 184, 274, 325
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	7 cut(s)	22, 28, 67, 74, 123, 224, 367
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	3 cut(s)	71, 192, 290
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	99, 349
NdeII	GATC	5 cut(s)	216, 220, 281, 309, 361
NlaIV	GGNNCC	3 cut(s)	363, 413, 414
PaeR7I	CTCGAG	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 335
PfeI	GAWTC	3 cut(s)	296, 377, 386
PflFI	GACNNNGTC	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	363, 413, 414
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PspXI	VCTCGAGB	1 cut(s)	5
PsuI	RGATCY	2 cut(s)	309, 361
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	2 cut(s)	15, 235
RsaNI	GTAC	2 cut(s)	14, 234
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	5 cut(s)	216, 220, 281, 309, 361
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	6 cut(s)	15, 85, 235, 266, 306, 323
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	5
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	6 cut(s)	52, 122, 164, 184, 274, 325
SsiI	CCGC	2 cut(s)	133, 204
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	18, 174
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	6 cut(s)	6, 219, 229, 323, 338, 406
TasI	AATT	6 cut(s)	52, 122, 164, 184, 274, 325
TfiI	GAWTC	3 cut(s)	296, 377, 386
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	378
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	5 cut(s)	122, 164, 184, 274, 325
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.