Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Forward (+)

28750739 .. 28753870

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCTCGCGCAGGTACAGCTGTCGTTGGAGGATGTGGAGAACGATGCTCGTAATTACGATGATGATCGTGCGGAGGCTGGAGAAGATTCACAGAGGATTGTAAAATGGGGTCTGGGTCTTGGATACGTTGAATTCACCCAAATCGACGCCGTCTACGCCGCCCTCGGATCCCTAGGCTACAAGAAGCTTCAAGTTCACATCTTCGAGGCGCCCAATGGAAGAGTTGAGGGGCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

4.39

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	71, 159
AclWI	GGATC	2 cut(s)	162, 175
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	2 cut(s)	147, 209
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	131, 191
AluBI	AGCT	2 cut(s)	19, 187
AluI	AGCT	2 cut(s)	19, 187
AlwI	GGATC	2 cut(s)	162, 175
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	131
AspA2I	CCTAGG	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	10, 211
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	127
AvrII	CCTAGG	1 cut(s)	172
BaeI	ACNNNNGTAYC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	159
BlnI	CCTAGG	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	3 cut(s)	169, 210, 231
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	147, 209
BsaJI	CCNNGG	2 cut(s)	163, 172
Bse8I	GATNNNNATC	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	163, 172
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	64, 167
BspACI	CCGC	2 cut(s)	71, 159
BspANI	GGCC	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	169, 210, 231
BspPI	GGATC	2 cut(s)	162, 175
BspT107I	GGYRCC	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	163, 172
BssMI	GATC	2 cut(s)	64, 167
BssNI	GRCGYC	2 cut(s)	147, 209
BssT1I	CCWWGG	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	2 cut(s)	147, 209
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	10, 211
BstKTI	GATC	2 cut(s)	67, 170
BstMBI	GATC	2 cut(s)	64, 167
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 155
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	10, 211
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	14
CviJI	RGCY	5 cut(s)	19, 77, 177, 187, 232
CviKI_1	RGCY	5 cut(s)	19, 77, 177, 187, 232
CviQI	GTAC	1 cut(s)	14
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	2 cut(s)	66, 169
DpnII	GATC	2 cut(s)	64, 167
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	9, 210
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	10, 211
Hin1I	GRCGYC	2 cut(s)	147, 209
Hin6I	GCGC	2 cut(s)	8, 209
HinP1I	GCGC	2 cut(s)	8, 209
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	154, 196
Hpy188I	TCNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	154, 196
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 155
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	147, 209
HspAI	GCGC	2 cut(s)	8, 209
KasI	GGCGCC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	64, 167
LpnPI	CCDG	2 cut(s)	63, 98
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	66, 169
MboI	GATC	2 cut(s)	64, 167
MboII	GAAGA	3 cut(s)	95, 193, 231
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	3 cut(s)	52, 131, 235
Mly113I	GGCGCC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	22, 67, 87, 173, 199, 220
MseI	TTAA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	16, 155
NarI	GGCGCC	1 cut(s)	209
NdeII	GATC	2 cut(s)	64, 167
NlaIV	GGNNCC	3 cut(s)	169, 210, 231
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	160
PluTI	GGCGCC	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	169, 210, 231
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	64, 167
Sau96I	GGNCC	1 cut(s)	230
SetI	ASST	4 cut(s)	15, 21, 129, 189
SfaNI	GCATC	1 cut(s)	34
SfoI	GGCGCC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	52, 131, 235
SsiI	CCGC	2 cut(s)	71, 159
SspDI	GGCGCC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	144, 204
TasI	AATT	3 cut(s)	52, 131, 235
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.