Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Forward (+)

48751701 .. 48752388

Gene Structure 688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGAAGTATAAAAGCTTACTGGCCGGCTAGAGTGGATCCTGAGTACGTACCCTATGATGTAAATGGGCAATATGGTCAATTGTTTGACATAATTGCACGGAGGCTCTTCCTCACCCCTTTCCTGATCAACGCCTACCCTTGGCCTGCAAATCAAACCCTAAACAAATGCATGTTTGGCTACGTCCTCTTCCAACCCAGCGCCAGTTCGCCGGATCTGGCAACCAAACTCCACTACGACAACATGCTCTTTGCCCAAATCGACGTCGTCTATGCAACCCTCAGATCCCTAGGCTACAAGAAACTTCATGCTCACATCTTCGAGGCCGCCGACCACCCTCTCGCTCTCACCGATCTCACCCATACCAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

7.88

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	4 cut(s)	32, 45, 222, 279
AcoI	YGGCCR	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	47, 51
AfiI	CCNNNNNNNGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	4 cut(s)	32, 45, 222, 279
AoxI	GGCC	3 cut(s)	23, 143, 324
AspA2I	CCTAGG	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	106, 340, 349
AvrII	CCTAGG	1 cut(s)	289
BamHI	GGATCC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	126
BfaI	CTAG	2 cut(s)	30, 290
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	327
BlnI	CCTAGG	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	140, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	26, 204
BseDI	CCNNGG	2 cut(s)	140, 289
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	33, 295
BseNI	ACTGG	2 cut(s)	26, 204
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	3 cut(s)	25, 145, 326
BsiSI	CCGG	2 cut(s)	26, 212
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	3 cut(s)	25, 145, 326
Bsp143I	GATC	5 cut(s)	37, 126, 214, 284, 352
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	3 cut(s)	25, 145, 326
BspCNI	CTCAG	2 cut(s)	34, 294
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	32, 45, 222, 279
BspQI	GCTCTTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	26, 204
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	140, 289
BssMI	GATC	5 cut(s)	37, 126, 214, 284, 352
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	140, 289
Bst6I	CTCTTC	2 cut(s)	113, 194
BstACI	GRCGYC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	27, 147
BstDEI	CTNAG	2 cut(s)	42, 281
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	5 cut(s)	40, 129, 217, 287, 355
BstMBI	GATC	5 cut(s)	37, 126, 214, 284, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	175, 247
BstSNI	TACGTA	1 cut(s)	49
BstX2I	RGATCY	3 cut(s)	37, 214, 284
BstYI	RGATCY	3 cut(s)	37, 214, 284
BsuRI	GGCC	3 cut(s)	25, 145, 326
Cac8I	GCNNGC	2 cut(s)	27, 147
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	46, 50
CviAII	CATG	3 cut(s)	172, 244, 308
CviJI	RGCY	8 cut(s)	17, 25, 29, 106, 145, 180, 294, 326
CviKI_1	RGCY	8 cut(s)	17, 25, 29, 106, 145, 180, 294, 326
CviQI	GTAC	2 cut(s)	46, 50
DdeI	CTNAG	2 cut(s)	42, 281
DpnI	GATC	5 cut(s)	39, 128, 216, 286, 354
DpnII	GATC	5 cut(s)	37, 126, 214, 284, 352
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	113, 194
EarI	CTCTTC	2 cut(s)	113, 194
Eco105I	TACGTA	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	140, 289
EcoT14I	CCWWGG	2 cut(s)	140, 289
EcoT22I	ATGCAT	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	140, 289
FaeI	CATG	3 cut(s)	175, 247, 311
FaiI	YATR	9 cut(s)	11, 57, 75, 92, 173, 245, 273, 309, 363
FatI	CATG	3 cut(s)	171, 243, 307
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	30, 290
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	25, 145, 326
HapII	CCGG	2 cut(s)	26, 212
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	175, 247, 311
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	15
HpaII	CCGG	2 cut(s)	26, 212
HphI	GGTGA	3 cut(s)	106, 340, 349
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	2 cut(s)	41, 124
Hpy99I	CGWCG	2 cut(s)	266, 269
HpyCH4IV	ACGT	3 cut(s)	48, 183, 264
HpyCH4V	TGCA	4 cut(s)	98, 149, 171, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	42, 281
HpySE526I	ACGT	3 cut(s)	48, 183, 264
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	175, 247, 311
HspAI	GCGC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	37, 126, 214, 284, 352
LguI	GCTCTTC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	7, 39, 54, 137, 159, 203, 211, 217, 225
MaeI	CTAG	2 cut(s)	30, 290
MaeII	ACGT	3 cut(s)	48, 183, 264
MalI	GATC	5 cut(s)	39, 128, 216, 286, 354
MboI	GATC	5 cut(s)	37, 126, 214, 284, 352
MboII	GAAGA	3 cut(s)	100, 181, 310
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	3 cut(s)	37, 214, 284
MluCI	AATT	2 cut(s)	80, 93
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	96, 122, 197, 290, 316, 348
Mph1103I	ATGCAT	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	25
MspI	CCGG	2 cut(s)	26, 212
MunI	CAATTG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	177
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	5 cut(s)	37, 126, 214, 284, 352
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	175, 247, 311
NlaIV	GGNNCC	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	173
NspI	RCATGY	2 cut(s)	175, 247
PciSI	GCTCTTC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 348
PdiI	GCCGGC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	37, 214, 284
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	47, 51
RsaNI	GTAC	2 cut(s)	46, 50
SapI	GCTCTTC	1 cut(s)	113
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	5 cut(s)	37, 126, 214, 284, 352
SetI	ASST	4 cut(s)	19, 51, 186, 267
SnaBI	TACGTA	1 cut(s)	49
Sse9I	AATT	2 cut(s)	80, 93
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	30, 290
StyI	CCWWGG	2 cut(s)	140, 289
TaiI	ACGT	3 cut(s)	51, 186, 267
TaqI	TCGA	2 cut(s)	261, 321
TasI	AATT	2 cut(s)	80, 93
TauI	GCSGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	266
XceI	RCATGY	2 cut(s)	175, 247
XmaJI	CCTAGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	30, 290
ZraI	GACGTC	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.