Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Reverse (-)

51563119 .. 51564111

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG286800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGAGTAGGGCTGCAATTTTGATGGGTACGTTGTGTGGATTGGAAGAGTGGCCGTCTCTCACCGTCGAGTGGTTGTCGAACAGGGAAGAGCCACCGGGGAAGGACTACTCGGTGCAGCAGATGATATTGGGGACGCACACCTCGGAAAAGGAGCCCAATCATCTTATGCTCGCGCAGGTACAACTTCCGTTGGAGGATGCGAAGAACGATGCTCGTAATTACGATGATGATCGTGCGGAGGCTAGAGGTTTCGGCTGCACTAATGGTAAGTTGTTTAATTTTGGCGAAAGGCTAGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

101

Amino Acids

11.4

Weight (kDa)

4.68

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1C_H4-bd	PF12265	17 - 64	5.5e-15	Histone-binding protein RBBP4 or subunit C of CAF1 complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	53
AfaI	GTAC	2 cut(s)	31, 183
AfiI	CCNNNNNNNGG	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	14, 118, 258
AspLEI	GCGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	130, 245
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	246, 296
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	15, 119, 259
BlsI	GCNGC	3 cut(s)	16, 120, 260
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	190, 202
BpuMI	CCSGG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	98, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	98, 144
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	130, 245
BsgI	GTGCAG	2 cut(s)	137, 244
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	98, 144
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	42, 84
BstC8I	GCNNGC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	130, 245
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	30, 182
CviJI	RGCY	7 cut(s)	14, 55, 94, 157, 245, 258, 295
CviKI_1	RGCY	7 cut(s)	14, 55, 94, 157, 245, 258, 295
CviQI	GTAC	2 cut(s)	30, 182
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	42, 84
EarI	CTCTTC	2 cut(s)	42, 84
Eco24I	GRGCYC	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	63
FaiI	YATR	1 cut(s)	170
FaqI	GGGAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	15, 119, 259
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	15, 119, 259
FspBI	CTAG	2 cut(s)	246, 296
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	3 cut(s)	15, 119, 259
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	17, 118, 261
HpySE526I	ACGT	1 cut(s)	32
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	3 cut(s)	70, 111, 164
Lsp1109I	GCAGC	2 cut(s)	130, 245
LweI	GCATC	2 cut(s)	190, 202
MaeI	CTAG	2 cut(s)	246, 296
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	59, 101, 217
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	18, 220, 280
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	4 cut(s)	154, 190, 235, 242
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	16, 120, 260
PspN4I	GGNNCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	31, 183
RsaNI	GTAC	2 cut(s)	30, 182
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	15, 119, 259
Sau3AI	GATC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	35, 146, 183, 253
SfaNI	GCATC	2 cut(s)	190, 202
Sse9I	AATT	3 cut(s)	18, 220, 280
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	246, 296
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	69, 80
TasI	AATT	3 cut(s)	18, 220, 280
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	3 cut(s)	14, 118, 258
TspGWI	ACGGA	1 cut(s)	180
XspI	CTAG	2 cut(s)	246, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.