Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019945

Physical Location & Seq

Genomic Coordinates Forward (+)

904427 .. 905174

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATATTGGGGACGCACACCTCGGAAAAGGAGCCCAATTATCTTATGCTCGAGCAGGTACAGCTGTCGTTGGAGGACGCGGAGAACGATGCTCGTAATTATGATGATGATCGTGCGGAGGCTGGAGGTTTCGGCTGCACTAATGGCAAGGTTGAGAAAGATTTTGAATTTTTGAGGAGGAAGCATTGGAATGTCAATCAAGTTGTGAAATTTGAACAGTTTGAAAGAAATTCGACCGGTGTCATCCCCGCCGACGCTCTGGTCTGCGTTTTTCCGATCTTTGAAGCTCCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

98

Amino Acids

11.18

Weight (kDa)

4.61

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019945)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0044411
rosa_laevigata	RLG00000006500 RLG00000019235
rosa_multiflora	Rmu_sc0000898.1_g000095
rosa_samantha	Rh1AG286800 Rh2BG011600 Rh7CG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	46
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	80, 116, 249
AcsI	RAATTY	3 cut(s)	167, 209, 229
AfaI	GTAC	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	4 cut(s)	167, 215, 224, 284
AluBI	AGCT	2 cut(s)	64, 287
AluI	AGCT	2 cut(s)	64, 287
Ama87I	CYCGRG	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	3 cut(s)	167, 209, 229
AsiGI	ACCGGT	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BanII	GRGCYC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	236, 289
Bse118I	RCCGGY	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	237
BshTI	ACCGGT	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	237, 290
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	109, 276
BspACI	CCGC	3 cut(s)	80, 116, 249
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	109, 276
Bst4CI	ACNGT	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	112, 279
BstMBI	GATC	2 cut(s)	109, 276
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 144
BstPAI	GACNNNNGTC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	3 cut(s)	22, 86, 263
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	236
CviJI	RGCY	5 cut(s)	34, 64, 122, 135, 287
CviKI_1	RGCY	5 cut(s)	34, 64, 122, 135, 287
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	2 cut(s)	111, 278
DpnII	GATC	2 cut(s)	109, 276
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	36
FaiI	YATR	2 cut(s)	47, 102
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	2 cut(s)	237, 290
HgaI	GACGC	3 cut(s)	22, 86, 263
HpaII	CCGG	2 cut(s)	237, 290
Hpy188I	TCNGA	2 cut(s)	25, 276
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 144
Kzo9I	GATC	2 cut(s)	109, 276
LmnI	GCTCC	2 cut(s)	31, 292
LpnPI	CCDG	4 cut(s)	41, 108, 245, 250
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	79
MalI	GATC	2 cut(s)	111, 278
MboI	GATC	2 cut(s)	109, 276
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	37, 97, 167, 209, 229
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	31, 67, 112, 119, 168, 171
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	237, 290
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	61, 144
NdeII	GATC	2 cut(s)	109, 276
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	109, 276
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	23, 60, 66, 130, 153, 289
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	37, 97, 167, 209, 229
SsiI	CCGC	3 cut(s)	80, 116, 249
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	51, 233
TasI	AATT	5 cut(s)	37, 97, 167, 209, 229
TseI	GCWGC	1 cut(s)	135
XapI	RAATTY	3 cut(s)	167, 209, 229
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.