Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014157

Physical Location & Seq

Genomic Coordinates Reverse (-)

42630821 .. 42635935

Gene Structure 5115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGATACTCTACGCCGTTGTTGCTCGCGGCACCGTCGTCTTGTCCGAGTTTAGCGCCGTCAGCGGAAACACAGGCGCCGTGGCTCGCCGGATCTTAGAGAAGCTTCCGCCCGACTCCGATTCCAGGGTTTGCTTCTCCCAGGATCGGTACATCTTCCACATACTCACCTTGGATGGCCTCACTTTTCTCTGCATGGCCAACGACACTTTCGGCAGGAGGATACCGTTTGCGTACTTGGAGGATATTCATATGAGATTCATGAAAAACTACGGCAGAGTTGCGCCTTATGCGCCTGCTTATGCCATGAACGACGAGTTTTCGAGGGTGTTGCATCAGCAAATGGAGTTTTTCTCCAGCAATCCCAGTGCCGATACTCTCAGCCGCGTGAGAGGGGAAGTCGGTGAGATACGAACCATAATGGTCGACAACATAGAAAAGATATTGGAGAGAGGCGACCGAATTGAACTTCTTGTTGACAAAACTGCAACTATGCAAGACAGTGCATTTCACTTCAAGAAACAGTCAAAACGCCTTCATCGGGCTCTGTGGATGAAAAATGCCAAACTCTTGGCCCTGTTGACATGCTTGATTGTTGTGTTCCTGTACATTATCATTGCTGCTTGTTGTGGAGGAATCACACTACCGTCCTGCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.87

Weight (kDa)

8.93

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	5.2e-23	Regulated-SNARE-like domain
Synaptobrevin	PF00957	127 - 206	3.3e-27	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22360
fragaria_vesca	FvH4_3g25480
malus_domestica	MD03G1148600.v1.1
prunus_persica	Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1
pyrus_communis	pycom03g10290
rosa_chinensis	RchiOBHm_Chr5g0046561
rosa_laevigata	RLG00000034418
rosa_multiflora	Rmu_sc0003878.1_g000037
rosa_roxburghii	Rroxscaffold_1G00034840
rosa_rugosa	Rorug05G0229600
rosa_samantha	Rh5AG309900 Rh5BG318300 Rh5CG344000 Rh5DG328600
rosa_wichuraiana	Rw5G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 77
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	2 cut(s)	30, 387
AciI	CCGC	4 cut(s)	30, 66, 110, 385
AclWI	GGATC	2 cut(s)	101, 153
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	152, 236, 608
AfiI	CCNNNNNNNGG	3 cut(s)	126, 147, 541
AgsI	TTSAA	2 cut(s)	467, 517
AjnI	CCWGG	2 cut(s)	125, 141
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	2 cut(s)	101, 153
AoxI	GGCC	3 cut(s)	178, 198, 573
ApeKI	GCWGC	1 cut(s)	620
AspLEI	GCGC	4 cut(s)	59, 80, 286, 295
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	2 cut(s)	160, 416
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	32, 77
BanII	GRGCYC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	4 cut(s)	2, 44, 65, 289
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	2 cut(s)	127, 143
BciVI	GTATCC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	2 cut(s)	60, 81
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	3 cut(s)	31, 385, 621
BlsI	GCNGC	3 cut(s)	32, 386, 622
Bme1390I	CCNGG	2 cut(s)	127, 143
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	2 cut(s)	34, 79
BmrFI	CCNGG	2 cut(s)	127, 143
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	81, 126, 141, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 147, 541
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	127, 143
BseDI	CCNNGG	4 cut(s)	81, 126, 141, 171
BseGI	GGATG	2 cut(s)	181, 558
BseLI	CCNNNNNNNGG	3 cut(s)	126, 147, 541
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	30, 387
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	180, 200, 575
BshNI	GGYRCC	2 cut(s)	32, 77
BsiEI	CGRYCG	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	126, 147, 541
BsnI	GGCC	3 cut(s)	180, 200, 575
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	93, 145, 656
BspACI	CCGC	4 cut(s)	30, 66, 110, 385
BspANI	GGCC	3 cut(s)	180, 200, 575
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	30, 387
BspHI	TCATGA	2 cut(s)	261, 659
BspLI	GGNNCC	2 cut(s)	34, 79
BspMAI	CTGCAG	1 cut(s)	656
BspPI	GGATC	2 cut(s)	101, 153
BspT107I	GGYRCC	2 cut(s)	32, 77
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	4 cut(s)	81, 126, 141, 171
BssMI	GATC	3 cut(s)	93, 145, 656
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	127, 143
Bst4CI	ACNGT	5 cut(s)	37, 228, 503, 525, 648
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	3 cut(s)	28, 88, 297
BstDEI	CTNAG	2 cut(s)	97, 380
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	181, 558
BstFNI	CGCG	2 cut(s)	30, 387
BstH2I	RGCGCY	2 cut(s)	60, 81
BstHHI	GCGC	4 cut(s)	59, 80, 286, 295
BstKTI	GATC	3 cut(s)	96, 148, 659
BstMBI	GATC	3 cut(s)	93, 145, 656
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 63, 290, 292
BstNI	CCWGG	2 cut(s)	127, 143
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	125, 141
BstSFI	CTRYAG	1 cut(s)	652
BstUI	CGCG	2 cut(s)	30, 387
BstV1I	GCAGC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	180, 200, 575
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	181, 558
BtsIMutI	CAGTG	2 cut(s)	373, 508
Cac8I	GCNNGC	3 cut(s)	28, 88, 297
CciI	TCATGA	2 cut(s)	261, 659
CfoI	GCGC	4 cut(s)	59, 80, 286, 295
Cfr13I	GGNCC	1 cut(s)	574
Csp6I	GTAC	3 cut(s)	151, 235, 607
CviAII	CATG	5 cut(s)	196, 262, 307, 585, 660
CviJI	RGCY	7 cut(s)	86, 106, 180, 200, 384, 545, 575
CviKI_1	RGCY	7 cut(s)	86, 106, 180, 200, 384, 545, 575
CviQI	GTAC	3 cut(s)	151, 235, 607
DdeI	CTNAG	2 cut(s)	97, 380
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	3 cut(s)	95, 147, 658
DpnII	GATC	3 cut(s)	93, 145, 656
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	125, 141
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	199, 265, 310, 588, 663
FatI	CATG	5 cut(s)	195, 261, 306, 584, 659
FauNDI	CATATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	31, 385, 621
FokI	GGATG	2 cut(s)	188, 565
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	3 cut(s)	31, 385, 621
GlaI	GCGC	4 cut(s)	58, 79, 285, 294
GluI	GCNGC	3 cut(s)	31, 385, 621
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	2 cut(s)	60, 81
HaeIII	GGCC	3 cut(s)	180, 200, 575
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	4 cut(s)	59, 80, 286, 295
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	199, 265, 310, 588, 663
Hin6I	GCGC	4 cut(s)	57, 78, 284, 293
HinP1I	GCGC	4 cut(s)	57, 78, 284, 293
HincII	GTYRAC	3 cut(s)	427, 478, 582
HindII	GTYRAC	3 cut(s)	427, 478, 582
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	4 cut(s)	116, 122, 258, 636
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	2 cut(s)	160, 416
Hpy166II	GTNNAC	3 cut(s)	427, 478, 582
Hpy188I	TCNGA	2 cut(s)	49, 121
Hpy188III	TCNNGA	3 cut(s)	262, 517, 660
Hpy8I	GTNNAC	3 cut(s)	427, 478, 582
Hpy99I	CGWCG	2 cut(s)	41, 317
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	5 cut(s)	37, 228, 503, 525, 648
HpyCH4V	TGCA	6 cut(s)	195, 334, 488, 496, 506, 654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 63, 290, 292
HpyF3I	CTNAG	2 cut(s)	97, 380
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	199, 265, 310, 588, 663
HspAI	GCGC	4 cut(s)	57, 78, 284, 293
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	93, 145, 656
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	343
MalI	GATC	3 cut(s)	95, 147, 658
MboI	GATC	3 cut(s)	93, 145, 656
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	462
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	191, 213, 235, 318, 386, 446, 626
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	127, 143
MvaI	CCWGG	2 cut(s)	127, 143
MvnI	CGCG	2 cut(s)	30, 387
MwoI	GCNNNNNNNGC	4 cut(s)	23, 63, 290, 292
NarI	GGCGCC	1 cut(s)	78
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	3 cut(s)	93, 145, 656
NlaIII	CATG	5 cut(s)	199, 265, 310, 588, 663
NlaIV	GGNNCC	2 cut(s)	34, 79
NspI	RCATGY	1 cut(s)	588
PagI	TCATGA	2 cut(s)	261, 659
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	122, 258, 636
PkrI	GCNGC	3 cut(s)	32, 386, 622
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	125, 141
PspGI	CCWGG	2 cut(s)	125, 141
PspN4I	GGNNCC	2 cut(s)	34, 79
PspPI	GGNCC	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	3 cut(s)	152, 236, 608
RsaNI	GTAC	3 cut(s)	151, 235, 607
SalI	GTCGAC	1 cut(s)	425
SatI	GCNGC	3 cut(s)	31, 385, 621
Sau3AI	GATC	3 cut(s)	93, 145, 656
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	127, 143
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	2 cut(s)	108, 173
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	652
SfoI	GGCGCC	1 cut(s)	79
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	4 cut(s)	30, 66, 110, 385
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	125, 141
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	5 cut(s)	37, 228, 503, 525, 648
TaqI	TCGA	2 cut(s)	323, 426
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	1 cut(s)	462
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	2 cut(s)	33, 387
TfiI	GAWTC	3 cut(s)	122, 258, 636
TscAI	CASTG	2 cut(s)	373, 508
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	6 cut(s)	239, 250, 278, 323, 527, 569
TspRI	CASTG	2 cut(s)	373, 508
XceI	RCATGY	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.