RchiOBHm_Chr5g0054431

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019416
Physical Location & Seq
Reverse (-)
57009433 .. 57013498
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1209 bp
ATGTCTCAGAAAAGCGAATCCTCGTTGGAGAACTTGGAATCTGAAGGAATGATTCCCCATCTTCCTCAGGAGATCAGACTAAACATCTTGTTTAGGCTACCAGTAGAGGGCTTGATCAGATGCACCTCTGTGCGCAAGTCTTGGAGAACAGTGATAAAAGACCAGAGCTTCATCGGAGACTATAACAGCTGTGCAAAGAATTCTGCTATCGAGAATGGTACTCAACTGTTATTGGTCCATGGTACTGCTTTTACCTTTGAGGTCGAAAGGGGAATCGTTTCCGGTGCATTATTAGGACATGAAGTTTACTCCTTGCACTATGATGACCCCACTTTTCTTGAGCACAGCAGGATTCGAGTTCCAGTTGTTCCTAGGTGGAATATATGTTTTCGTGTTGCTGGCATTTGTGATGGCATAGTTTTGCTTGCAGATGATGTACCTATATACGGTTACAACTTCATATTATGCAATCCATTCCTAAGAAAGTCGGTTATCCTTCCCCATCCTAATGTTACCTTCGAGACTCATGGTCTCTATGAAGCTTCTGTTGGGTTTGGTCATGATGCTATGAAAAATGACTATAAGGTTGTGATGCTTGCCAGTCTTTTGGATGAATTACCGGGTAGTGAAAGTCGAACTGTTGTTGAGGTTTATTCACTTGTTGCACACTCTTGGAAGGACCCTCAAATTGCTCCTCTAATTAGAATTGAGGGACGTGCACGCGCTGCTTTTTTTGATGGTGCTCTTCATTGGCCAGCATCGCGGAGGGAAAATAACAATTGTTGCAATTTTATTTTGGTATTTGATGTCAGCACTGAATCATTTCGCCCAGAGATAATGATGCCAGAGAGTGTAAGAACACTCGTGGAAGTCAAGTCTTTGGAATTGTCTCTTTCGAGTGATCAGAAATCCATTGCTTTATTCGTTGAAGACGCTGATGTTCTTCAGGTTTGGGTATTGAATGATTATGGCAGGCCTGAGTCCTGGACCCTATTGATGCAAGAAGCACCATTTACTTCATTATGTTTCATGAGAAGTGGTGAATTATTACTTGCTGATGATCTGGAAGGGTACTATGGATTACTTTCACAAAAACCTGTGTCCCGAGAACGTAGAAGACTTGAGGTTACTGGATATGGGGACTACACTGTGGATTCTTATGGTCAGACCCTCCAATTACTCAACGAGGAGAATGCAAGATCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

402

Amino Acids

45.48

Weight (kDa)

5.12

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 133 - 334 3.2e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 135 - 341 5.1e-21 F-box associated beta propeller domain
FBA_3 PF08268 152 - 349 3.5e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 134
AccII CGCG 2 cut(s) 723, 763
AciI CCGC 1 cut(s) 763
AclWI GGATC 1 cut(s) 1194
AcoI YGGCCR 1 cut(s) 752
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 2 cut(s) 63, 929
AfaI GTAC 4 cut(s) 220, 244, 438, 1073
AfiI CCNNNNNNNGG 2 cut(s) 107, 446
AgsI TTSAA 2 cut(s) 929, 961
AhdI GACNNNNNGTC 1 cut(s) 528
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 1 cut(s) 983
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 3 cut(s) 168, 189, 542
AluI AGCT 3 cut(s) 168, 189, 542
Alw21I GWGCWC 3 cut(s) 345, 721, 745
Alw26I GTCTC 5 cut(s) 9, 171, 515, 536, 894
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 1 cut(s) 1194
Ama87I CYCGRG 1 cut(s) 1104
AoxI GGCC 2 cut(s) 752, 974
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 1 cut(s) 199
Asp700I GAANNNNTTC 2 cut(s) 277, 822
AspA2I CCTAGG 1 cut(s) 371
AspLEI GCGC 2 cut(s) 135, 725
AspS9I GGNCC 3 cut(s) 235, 679, 987
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 1 cut(s) 1052
AvaI CYCGRG 1 cut(s) 1104
AvaII GGWCC 3 cut(s) 235, 679, 987
AvrII CCTAGG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 721
BalI TGGCCA 1 cut(s) 754
BauI CACGAG 1 cut(s) 863
BbsI GAAGAC 2 cut(s) 936, 1123
Bbv12I GWGCWC 3 cut(s) 345, 721, 745
BbvI GCAGC 1 cut(s) 712
BccI CCATC 4 cut(s) 66, 404, 510, 731
BcgI CGANNNNNNTGC 2 cut(s) 1175, 1209
BciT130I CCWGG 1 cut(s) 985
BclI TGATCA 2 cut(s) 114, 901
BcnI CCSGG 1 cut(s) 621
BcoDI GTCTC 5 cut(s) 9, 171, 515, 536, 894
BfaI CTAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 726
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 1 cut(s) 727
Bme1390I CCNGG 2 cut(s) 621, 985
Bme18I GGWCC 3 cut(s) 235, 679, 987
BmeRI GACNNNNNGTC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 1104
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 235, 679, 987
BmiI GGNNCC 2 cut(s) 681, 989
BmrFI CCNGG 2 cut(s) 621, 985
BmsI GCATC 6 cut(s) 110, 553, 582, 767, 831, 987
BpiI GAAGAC 2 cut(s) 936, 1123
BpuEI CTTGAG 2 cut(s) 359, 1142
BpuMI CCSGG 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 238, 371
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 446
Bse1I ACTGG 4 cut(s) 101, 362, 600, 1135
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 1 cut(s) 985
BseDI CCNNGG 2 cut(s) 238, 371
BseGI GGATG 2 cut(s) 502, 616
BseLI CCNNNNNNNGG 2 cut(s) 107, 446
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 3 cut(s) 20, 80, 969
BseNI ACTGG 4 cut(s) 101, 362, 600, 1135
BseRI GAGGAG 2 cut(s) 684, 1202
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 1 cut(s) 712
Bsh1236I CGCG 2 cut(s) 723, 763
BshFI GGCC 2 cut(s) 754, 976
BsiHKAI GWGCWC 3 cut(s) 345, 721, 745
BsiHKCI CYCGRG 1 cut(s) 1104
BsiSI CCGG 2 cut(s) 282, 620
BslFI GGGAC 3 cut(s) 726, 1087, 1154
BslI CCNNNNNNNGG 2 cut(s) 107, 446
BsmAI GTCTC 5 cut(s) 9, 171, 515, 536, 894
BsmFI GGGAC 3 cut(s) 726, 1087, 1154
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 2 cut(s) 754, 976
Bso31I GGTCTC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 1104
Bsp1286I GDGCHC 3 cut(s) 345, 721, 745
Bsp143I GATC 5 cut(s) 72, 114, 901, 1060, 1199
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 1 cut(s) 763
BspANI GGCC 2 cut(s) 754, 976
BspCNI CTCAG 3 cut(s) 19, 79, 970
BspFNI CGCG 2 cut(s) 723, 763
BspHI TCATGA 2 cut(s) 559, 1029
BspLI GGNNCC 2 cut(s) 681, 989
BspPI GGATC 1 cut(s) 1194
BspQI GCTCTTC 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 4 cut(s) 101, 362, 600, 1135
BssECI CCNNGG 2 cut(s) 238, 371
BssMI GATC 5 cut(s) 72, 114, 901, 1060, 1199
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 2 cut(s) 238, 371
Bst2BI CACGAG 1 cut(s) 863
Bst2UI CCWGG 1 cut(s) 985
Bst4CI ACNGT 5 cut(s) 151, 228, 449, 640, 1150
Bst6I CTCTTC 1 cut(s) 750
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 6 cut(s) 400, 426, 597, 721, 756, 974
BstDEI CTNAG 4 cut(s) 6, 66, 479, 978
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 502, 616
BstFNI CGCG 2 cut(s) 723, 763
BstHHI GCGC 2 cut(s) 135, 725
BstKTI GATC 5 cut(s) 75, 117, 904, 1063, 1202
BstMAI GTCTC 5 cut(s) 9, 171, 515, 536, 894
BstMBI GATC 5 cut(s) 72, 114, 901, 1060, 1199
BstMWI GCNNNNNNNGC 2 cut(s) 725, 760
BstNI CCWGG 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 619, 983
BstSLI GKGCMC 1 cut(s) 721
BstUI CGCG 2 cut(s) 723, 763
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 2 cut(s) 936, 1123
BstX2I RGATCY 1 cut(s) 1199
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 1199
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 754, 976
BtgI CCRYGG 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 744
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 2 cut(s) 502, 616
BtsIMutI CAGTG 3 cut(s) 156, 813, 1146
Cac8I GCNNGC 6 cut(s) 400, 426, 597, 721, 756, 974
CciI TCATGA 2 cut(s) 559, 1029
CfoI GCGC 2 cut(s) 135, 725
Cfr13I GGNCC 3 cut(s) 235, 679, 987
CseI GACGC 1 cut(s) 941
Csp6I GTAC 4 cut(s) 219, 243, 437, 1072
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 5 cut(s) 239, 299, 527, 560, 1030
CviJI RGCY 7 cut(s) 97, 111, 168, 189, 542, 754, 976
CviKI_1 RGCY 7 cut(s) 97, 111, 168, 189, 542, 754, 976
CviQI GTAC 4 cut(s) 219, 243, 437, 1072
DdeI CTNAG 4 cut(s) 6, 66, 479, 978
DpnI GATC 5 cut(s) 74, 116, 903, 1062, 1201
DpnII GATC 5 cut(s) 72, 114, 901, 1060, 1199
DriI GACNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 752
Eam1104I CTCTTC 1 cut(s) 750
Eam1105I GACNNNNNGTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 750
Eco130I CCWWGG 2 cut(s) 238, 371
Eco147I AGGCCT 1 cut(s) 976
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 3 cut(s) 235, 679, 987
Eco57I CTGAAG 2 cut(s) 63, 929
Eco81I CCTNAGG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 983
EcoT14I CCWWGG 2 cut(s) 238, 371
ErhI CCWWGG 2 cut(s) 238, 371
FaeI CATG 5 cut(s) 242, 302, 530, 563, 1033
FaqI GGGAC 3 cut(s) 726, 1087, 1154
FatI CATG 5 cut(s) 238, 298, 526, 559, 1029
FbaI TGATCA 2 cut(s) 114, 901
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 2 cut(s) 489, 623
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 1 cut(s) 372
FspI TGCGCA 1 cut(s) 134
GlaI GCGC 2 cut(s) 134, 724
GluI GCNGC 1 cut(s) 726
HaeIII GGCC 2 cut(s) 754, 976
HapII CCGG 2 cut(s) 282, 620
HgaI GACGC 1 cut(s) 941
HhaI GCGC 2 cut(s) 135, 725
Hin1II CATG 5 cut(s) 242, 302, 530, 563, 1033
Hin6I GCGC 2 cut(s) 133, 723
HinP1I GCGC 2 cut(s) 133, 723
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 9 cut(s) 17, 38, 52, 273, 352, 523, 818, 980, 1154
HpaII CCGG 2 cut(s) 282, 620
HphI GGTGA 1 cut(s) 1052
Hpy166II GTNNAC 2 cut(s) 307, 719
Hpy188I TCNGA 7 cut(s) 9, 43, 77, 119, 176, 906, 1167
Hpy188III TCNNGA 8 cut(s) 68, 211, 338, 520, 560, 1030, 1064, 1104
Hpy8I GTNNAC 2 cut(s) 307, 719
HpyAV CCTTC 5 cut(s) 38, 506, 526, 670, 1061
HpyCH4III ACNGT 5 cut(s) 151, 228, 449, 640, 1150
HpyCH4IV ACGT 2 cut(s) 715, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 760
HpyF3I CTNAG 4 cut(s) 6, 66, 479, 978
HpySE526I ACGT 2 cut(s) 715, 1111
Hsp92II CATG 5 cut(s) 242, 302, 530, 563, 1033
HspAI GCGC 2 cut(s) 133, 723
Ksp22I TGATCA 2 cut(s) 114, 901
Kzo9I GATC 5 cut(s) 72, 114, 901, 1060, 1199
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 6 cut(s) 110, 553, 582, 767, 831, 987
MaeI CTAG 1 cut(s) 372
MaeII ACGT 2 cut(s) 715, 1111
MaeIII GTNAC 3 cut(s) 449, 511, 1126
MalI GATC 5 cut(s) 74, 116, 903, 1062, 1201
MboI GATC 5 cut(s) 72, 114, 901, 1060, 1199
MboII GAAGA 5 cut(s) 53, 737, 935, 941, 1128
MfeI CAATTG 1 cut(s) 778
MflI RGATCY 1 cut(s) 1199
MhlI GDGCHC 3 cut(s) 345, 721, 745
MlsI TGGCCA 1 cut(s) 754
MluNI TGGCCA 1 cut(s) 754
MlyI GAGTC 2 cut(s) 517, 989
MmeI TCCRAC 1 cut(s) 6
Mox20I TGGCCA 1 cut(s) 754
MroXI GAANNNNTTC 2 cut(s) 277, 822
MscI TGGCCA 1 cut(s) 754
MslI CAYNNNNRTG 3 cut(s) 128, 321, 507
Msp20I TGGCCA 1 cut(s) 754
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 2 cut(s) 282, 620
MspR9I CCNGG 2 cut(s) 621, 985
MunI CAATTG 1 cut(s) 778
Mva1269I GAATGC 1 cut(s) 1198
MvaI CCWGG 1 cut(s) 985
MvnI CGCG 2 cut(s) 723, 763
MwoI GCNNNNNNNGC 2 cut(s) 725, 760
NciI CCSGG 1 cut(s) 621
NcoI CCATGG 1 cut(s) 238
NdeII GATC 5 cut(s) 72, 114, 901, 1060, 1199
NlaIII CATG 5 cut(s) 242, 302, 530, 563, 1033
NlaIV GGNNCC 2 cut(s) 681, 989
NsbI TGCGCA 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 128
PagI TCATGA 2 cut(s) 559, 1029
PceI AGGCCT 1 cut(s) 976
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 1 cut(s) 1198
PdmI GAANNNNTTC 2 cut(s) 277, 822
PfeI GAWTC 7 cut(s) 17, 38, 52, 273, 352, 818, 1154
PfoI TCCNGGA 1 cut(s) 983
PkrI GCNGC 1 cut(s) 727
PleI GAGTC 2 cut(s) 517, 988
PpsI GAGTC 2 cut(s) 517, 988
PpuMI RGGWCCY 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 983
PspGI CCWGG 1 cut(s) 983
PspN4I GGNNCC 2 cut(s) 681, 989
PspPI GGNCC 3 cut(s) 235, 679, 987
PspPPI RGGWCCY 1 cut(s) 679
PsuI RGATCY 1 cut(s) 1199
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 4 cut(s) 220, 244, 438, 1073
RsaNI GTAC 4 cut(s) 219, 243, 437, 1072
RseI CAYNNNNRTG 3 cut(s) 128, 321, 507
SapI GCTCTTC 1 cut(s) 750
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 5 cut(s) 72, 114, 901, 1060, 1199
Sau96I GGNCC 3 cut(s) 235, 679, 987
SchI GAGTC 2 cut(s) 517, 989
ScrFI CCNGG 2 cut(s) 621, 985
SduI GDGCHC 3 cut(s) 345, 721, 745
SfaNI GCATC 6 cut(s) 110, 553, 582, 767, 831, 987
SinI GGWCC 3 cut(s) 235, 679, 987
SmiMI CAYNNNNRTG 3 cut(s) 128, 321, 507
SmlI CTYRAG 2 cut(s) 338, 1121
SmoI CTYRAG 2 cut(s) 338, 1121
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 1 cut(s) 763
SspMI CTAG 1 cut(s) 372
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 2 cut(s) 619, 983
StyI CCWWGG 2 cut(s) 238, 371
TaaI ACNGT 5 cut(s) 151, 228, 449, 640, 1150
TaiI ACGT 2 cut(s) 718, 1114
TaqI TCGA 6 cut(s) 210, 264, 355, 519, 634, 896
TfiI GAWTC 7 cut(s) 17, 38, 52, 273, 352, 818, 1154
TscAI CASTG 3 cut(s) 156, 820, 1153
TseI GCWGC 1 cut(s) 725
TspDTI ATGAA 9 cut(s) 160, 315, 448, 552, 584, 627, 737, 1008, 1018
TspRI CASTG 3 cut(s) 156, 820, 1153
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 3 cut(s) 235, 679, 987
XapI RAATTY 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 371
XmnI GAANNNNTTC 2 cut(s) 277, 822
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.