Rroxscaffold_1G00026480

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019416
Physical Location & Seq
Forward (+)
33368387 .. 33372747
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026480.1

Sequence Viewer

Length: 1251 bp
ATGTCTCAGAAAAGCGAAAGACTCGTTGGTTCAGCCTCGTTGGAGAACTTGGAATCTGAAGGAATGATTCCGCATCTTCCTCAGGAGATCAGACTAAACATCTTGTTTAGGCTACCTGTAGAGTGCTTGATCAGATGCACCTCTGTGCGCAAGTCTTGGAGAACAGTGATAAAAGACCAGAGCTTCATTGAAGACTACAATAGCTGTGCAAAGAATTCTGCAATCAAGAATGGTACTCAACTGTTATTGGTCCATTGTACTACTGTTACCTTGGGGGAAACCGTTTCCCGTGCATTAGGAAATGAAGTTTACTCCTTGCACTATGATGACCCCACTTTTCTTGAGCACAGCAGGATTCGAGTTCCAGTTGTTCCTAGGTGGAATATATGTTTTCGTGTTGCTGGCATTTGTGATGGCATAGTTTTGCTTGCAGATGATGTACGTATATATGGTTACAACTTCATATTATGCAATCCATTCCTAAGAAAGTCGGTTATCCTTCCCCATCCTAATGTTACCTTCGAGACTCATGGTCTCTATGAAGCTTCTGTTGGGTTTGGTCATGATGCTATGAACAATAATTATAAGGTTGTGATGCTTGCCAGTCTTTCGGATGAATTACCAGGTAGTGAAAGTCGAACTGTTGTTGAGGTTTATTCACTTGTTGCACACTCTTGGAAGGACCCTCAAATTGCTCCTCTAATTAGAATTGAGGGACGTGCACGCGCTGCTTTTGTTGATGGTGCTCTTCATTGGCCAGCATCGCGGAGGGAAAATAACAATCATTACAATTTTATTTTGGTATTTGATGTCAGCACTGAGTCATTTCGCCCAGAGATAATGATGCCAGAGAGTGTAAGAACACTTGTGGAAGTCAAGTCATTGGAATTGTCTCTTTCGAGTGATCAGAAATCCATTGCTTTATTTGTTGAAGACGCTGGTGTTCTTCAGGTTTGGGTATTGAATGATTATGGCAGGCCTGAGTCCTGGACCCTATTGATGCAAGAAGCATCATTTGCTTCATTGTGTTTCATGAGAAGTGGTGAATTAATACTTGCTGATGATGCTGATGATCTGGAAGGGTACTATGGATTACTTTCACAAAAACCTGTGACCGAGAACGTAGAAGACTTGAGGTTACTGGATATGAGGACTACACTGTGGATTCTTATGGTCAGACCCTCCAACTACTCAATGAGGAGAATGCAAGTTCCTACTGATGGAAGGAACAGTTGTACCTCAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

416

Amino Acids

47.14

Weight (kDa)

5.56

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 134 - 335 4e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 136 - 343 3.6e-22 F-box associated beta propeller domain
FBA_3 PF08268 150 - 353 1.6e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
Acc16I TGCGCA 1 cut(s) 149
AccII CGCG 2 cut(s) 726, 766
AciI CCGC 2 cut(s) 71, 766
AcoI YGGCCR 1 cut(s) 755
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 78, 932
AfaI GTAC 5 cut(s) 235, 259, 441, 1085, 1237
AfiI CCNNNNNNNGG 1 cut(s) 1220
AgsI TTSAA 3 cut(s) 191, 932, 964
AhdI GACNNNNNGTC 1 cut(s) 531
AjiI CACGTC 1 cut(s) 719
AjnI CCWGG 2 cut(s) 622, 986
AjuI GAANNNNNNNTTGG 4 cut(s) 9, 41, 534, 566
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 3 cut(s) 183, 204, 545
AluI AGCT 3 cut(s) 183, 204, 545
Alw21I GWGCWC 3 cut(s) 348, 724, 748
Alw26I GTCTC 4 cut(s) 9, 518, 539, 897
Alw44I GTGCAC 1 cut(s) 720
AoxI GGCC 2 cut(s) 755, 977
ApaLI GTGCAC 1 cut(s) 720
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 1 cut(s) 214
AseI ATTAAT 1 cut(s) 1049
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 2 cut(s) 150, 728
AspS9I GGNCC 3 cut(s) 250, 682, 990
AsuHPI GGTGA 1 cut(s) 1055
AvaII GGWCC 3 cut(s) 250, 682, 990
AvrII CCTAGG 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 724
BaeI ACNNNNGTAYC 1 cut(s) 1219
BalI TGGCCA 1 cut(s) 757
BbsI GAAGAC 3 cut(s) 198, 939, 1134
Bbv12I GWGCWC 3 cut(s) 348, 724, 748
BbvI GCAGC 1 cut(s) 715
BccI CCATC 4 cut(s) 407, 513, 734, 1214
BciT130I CCWGG 2 cut(s) 624, 988
BclI TGATCA 2 cut(s) 129, 904
BcoDI GTCTC 4 cut(s) 9, 518, 539, 897
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 729
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 624, 988
Bme18I GGWCC 3 cut(s) 250, 682, 990
BmeRI GACNNNNNGTC 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 719
BmgT120I GGNCC 3 cut(s) 250, 682, 990
BmiI GGNNCC 2 cut(s) 684, 992
BmrFI CCNGG 2 cut(s) 624, 988
BmsI GCATC 9 cut(s) 82, 125, 556, 585, 770, 834, 990, 1019, 1054
BpiI GAAGAC 3 cut(s) 198, 939, 1134
BpuEI CTTGAG 3 cut(s) 362, 1153, 1225
BsaAI YACGTR 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 270, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 1220
Bse1I ACTGG 3 cut(s) 365, 603, 1146
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 915
BseBI CCWGG 2 cut(s) 624, 988
BseDI CCNNGG 2 cut(s) 270, 374
BseGI GGATG 2 cut(s) 505, 619
BseLI CCNNNNNNNGG 1 cut(s) 1220
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 4 cut(s) 20, 95, 810, 972
BseNI ACTGG 3 cut(s) 365, 603, 1146
BseRI GAGGAG 2 cut(s) 687, 1213
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 1 cut(s) 715
Bsh1236I CGCG 2 cut(s) 726, 766
BshFI GGCC 2 cut(s) 757, 979
BsiHKAI GWGCWC 3 cut(s) 348, 724, 748
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 1220
BsmAI GTCTC 4 cut(s) 9, 518, 539, 897
BsmFI GGGAC 1 cut(s) 729
BsmI GAATGC 1 cut(s) 1209
BsnI GGCC 2 cut(s) 757, 979
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 3 cut(s) 348, 724, 748
Bsp143I GATC 4 cut(s) 87, 129, 904, 1072
BspACI CCGC 2 cut(s) 71, 766
BspANI GGCC 2 cut(s) 757, 979
BspCNI CTCAG 4 cut(s) 19, 94, 811, 973
BspFNI CGCG 2 cut(s) 726, 766
BspHI TCATGA 2 cut(s) 562, 1032
BspLI GGNNCC 2 cut(s) 684, 992
BspQI GCTCTTC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 915
BsrI ACTGG 3 cut(s) 365, 603, 1146
BssECI CCNNGG 2 cut(s) 270, 374
BssMI GATC 4 cut(s) 87, 129, 904, 1072
BssT1I CCWWGG 2 cut(s) 270, 374
Bst2UI CCWGG 2 cut(s) 624, 988
Bst4CI ACNGT 7 cut(s) 166, 243, 265, 283, 643, 1161, 1232
Bst6I CTCTTC 1 cut(s) 753
BstAPI GCANNNNNTGC 2 cut(s) 728, 1016
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 6 cut(s) 403, 429, 600, 724, 759, 977
BstDEI CTNAG 5 cut(s) 6, 81, 482, 819, 981
BstF5I GGATG 2 cut(s) 505, 619
BstFNI CGCG 2 cut(s) 726, 766
BstHHI GCGC 2 cut(s) 150, 728
BstKTI GATC 4 cut(s) 90, 132, 907, 1075
BstMAI GTCTC 4 cut(s) 9, 518, 539, 897
BstMBI GATC 4 cut(s) 87, 129, 904, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 728, 763, 1016, 1064
BstNI CCWGG 2 cut(s) 624, 988
BstSCI CCNGG 2 cut(s) 622, 986
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 724
BstSNI TACGTA 1 cut(s) 443
BstUI CGCG 2 cut(s) 726, 766
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 3 cut(s) 198, 939, 1134
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 757, 979
BtgZI GCGATG 1 cut(s) 747
BtrI CACGTC 1 cut(s) 719
BtsCI GGATG 2 cut(s) 505, 619
BtsIMutI CAGTG 3 cut(s) 171, 816, 1157
Cac8I GCNNGC 6 cut(s) 403, 429, 600, 724, 759, 977
CciI TCATGA 2 cut(s) 562, 1032
CfoI GCGC 2 cut(s) 150, 728
Cfr13I GGNCC 3 cut(s) 250, 682, 990
CseI GACGC 1 cut(s) 944
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 5 cut(s) 234, 258, 440, 1084, 1236
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 3 cut(s) 530, 563, 1033
CviJI RGCY 7 cut(s) 35, 112, 183, 204, 545, 757, 979
CviKI_1 RGCY 7 cut(s) 35, 112, 183, 204, 545, 757, 979
CviQI GTAC 5 cut(s) 234, 258, 440, 1084, 1236
DdeI CTNAG 5 cut(s) 6, 81, 482, 819, 981
DpnI GATC 4 cut(s) 89, 131, 906, 1074
DpnII GATC 4 cut(s) 87, 129, 904, 1072
DriI GACNNNNNGTC 1 cut(s) 531
EaeI YGGCCR 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 753
Eam1105I GACNNNNNGTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 753
Eco105I TACGTA 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 270, 374
Eco147I AGGCCT 1 cut(s) 979
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 3 cut(s) 250, 682, 990
Eco57I CTGAAG 2 cut(s) 78, 932
Eco81I CCTNAGG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 622, 986
EcoT14I CCWWGG 2 cut(s) 270, 374
ErhI CCWWGG 2 cut(s) 270, 374
FaeI CATG 3 cut(s) 533, 566, 1036
FaqI GGGAC 1 cut(s) 729
FatI CATG 3 cut(s) 529, 562, 1032
FbaI TGATCA 2 cut(s) 129, 904
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 2 cut(s) 492, 626
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 2 cut(s) 149, 727
GluI GCNGC 1 cut(s) 729
HaeIII GGCC 2 cut(s) 757, 979
HgaI GACGC 1 cut(s) 944
HhaI GCGC 2 cut(s) 150, 728
Hin1II CATG 3 cut(s) 533, 566, 1036
Hin6I GCGC 2 cut(s) 148, 726
HinP1I GCGC 2 cut(s) 148, 726
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 8 cut(s) 21, 53, 67, 355, 526, 821, 983, 1165
HphI GGTGA 1 cut(s) 1055
Hpy166II GTNNAC 2 cut(s) 310, 722
Hpy188I TCNGA 7 cut(s) 9, 58, 92, 134, 613, 909, 1178
Hpy188III TCNNGA 8 cut(s) 83, 226, 341, 523, 563, 1033, 1076, 1242
Hpy8I GTNNAC 2 cut(s) 310, 722
HpyAV CCTTC 6 cut(s) 53, 509, 529, 673, 1073, 1218
HpyCH4III ACNGT 7 cut(s) 166, 243, 265, 283, 643, 1161, 1232
HpyCH4IV ACGT 3 cut(s) 442, 718, 1122
HpyF10VI GCNNNNNNNGC 4 cut(s) 728, 763, 1016, 1064
HpyF3I CTNAG 5 cut(s) 6, 81, 482, 819, 981
HpySE526I ACGT 3 cut(s) 442, 718, 1122
Hsp92II CATG 3 cut(s) 533, 566, 1036
HspAI GCGC 2 cut(s) 148, 726
Ksp22I TGATCA 2 cut(s) 129, 904
Kzo9I GATC 4 cut(s) 87, 129, 904, 1072
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 9 cut(s) 82, 125, 556, 585, 770, 834, 990, 1019, 1054
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 1 cut(s) 375
MaeII ACGT 3 cut(s) 442, 718, 1122
MaeIII GTNAC 5 cut(s) 265, 452, 514, 1111, 1137
MalI GATC 4 cut(s) 89, 131, 906, 1074
MboI GATC 4 cut(s) 87, 129, 904, 1072
MboII GAAGA 6 cut(s) 68, 203, 740, 938, 944, 1139
MhlI GDGCHC 3 cut(s) 348, 724, 748
MlsI TGGCCA 1 cut(s) 757
MluCI AATT 9 cut(s) 214, 580, 617, 690, 702, 708, 790, 887, 1046
MluNI TGGCCA 1 cut(s) 757
MlyI GAGTC 4 cut(s) 15, 520, 830, 992
MmeI TCCRAC 2 cut(s) 21, 1209
Mox20I TGGCCA 1 cut(s) 757
MscI TGGCCA 1 cut(s) 757
MseI TTAA 1 cut(s) 1049
MslI CAYNNNNRTG 3 cut(s) 143, 324, 510
Msp20I TGGCCA 1 cut(s) 757
MspR9I CCNGG 2 cut(s) 624, 988
Mva1269I GAATGC 1 cut(s) 1209
MvaI CCWGG 2 cut(s) 624, 988
MvnI CGCG 2 cut(s) 726, 766
MwoI GCNNNNNNNGC 4 cut(s) 728, 763, 1016, 1064
NdeII GATC 4 cut(s) 87, 129, 904, 1072
NlaIII CATG 3 cut(s) 533, 566, 1036
NlaIV GGNNCC 2 cut(s) 684, 992
NmuCI GTSAC 1 cut(s) 1111
NsbI TGCGCA 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 143
PagI TCATGA 2 cut(s) 562, 1032
PceI AGGCCT 1 cut(s) 979
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 1 cut(s) 1209
PfeI GAWTC 4 cut(s) 53, 67, 355, 1165
PfoI TCCNGGA 1 cut(s) 986
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 4 cut(s) 15, 520, 829, 991
PpsI GAGTC 4 cut(s) 15, 520, 829, 991
Ppu21I YACGTR 1 cut(s) 443
PpuMI RGGWCCY 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 1049
PsiI TTATAA 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 622, 986
PspGI CCWGG 2 cut(s) 622, 986
PspN4I GGNNCC 2 cut(s) 684, 992
PspPI GGNCC 3 cut(s) 250, 682, 990
PspPPI RGGWCCY 1 cut(s) 682
RsaI GTAC 5 cut(s) 235, 259, 441, 1085, 1237
RsaNI GTAC 5 cut(s) 234, 258, 440, 1084, 1236
RseI CAYNNNNRTG 3 cut(s) 143, 324, 510
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 1 cut(s) 1049
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 4 cut(s) 87, 129, 904, 1072
Sau96I GGNCC 3 cut(s) 250, 682, 990
SchI GAGTC 4 cut(s) 15, 520, 830, 992
ScrFI CCNGG 2 cut(s) 624, 988
SduI GDGCHC 3 cut(s) 348, 724, 748
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 9 cut(s) 82, 125, 556, 585, 770, 834, 990, 1019, 1054
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 3 cut(s) 250, 682, 990
SmiMI CAYNNNNRTG 3 cut(s) 143, 324, 510
SmlI CTYRAG 3 cut(s) 341, 1132, 1240
SmoI CTYRAG 3 cut(s) 341, 1132, 1240
SnaBI TACGTA 1 cut(s) 443
Sse9I AATT 9 cut(s) 214, 580, 617, 690, 702, 708, 790, 887, 1046
SseBI AGGCCT 1 cut(s) 979
SsiI CCGC 2 cut(s) 71, 766
SspMI CTAG 1 cut(s) 375
StuI AGGCCT 1 cut(s) 979
StyD4I CCNGG 2 cut(s) 622, 986
StyI CCWWGG 2 cut(s) 270, 374
TaaI ACNGT 7 cut(s) 166, 243, 265, 283, 643, 1161, 1232
TaiI ACGT 3 cut(s) 445, 721, 1125
TaqI TCGA 4 cut(s) 358, 522, 637, 899
TaqII GACCGA 1 cut(s) 1130
TasI AATT 9 cut(s) 214, 580, 617, 690, 702, 708, 790, 887, 1046
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 4 cut(s) 53, 67, 355, 1165
Tru1I TTAA 1 cut(s) 1049
Tru9I TTAA 1 cut(s) 1049
TscAI CASTG 3 cut(s) 171, 823, 1164
TseFI GTSAC 1 cut(s) 1111
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 1 cut(s) 1111
TspDTI ATGAA 9 cut(s) 175, 318, 451, 555, 587, 630, 740, 1011, 1021
TspRI CASTG 3 cut(s) 171, 823, 1164
VneI GTGCAC 1 cut(s) 720
VpaK11BI GGWCC 3 cut(s) 250, 682, 990
VspI ATTAAT 1 cut(s) 1049
XapI RAATTY 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.