RLG00000034931

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019416
Physical Location & Seq
Reverse (-)
57242477 .. 57243185
709 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034931

Sequence Viewer

Length: 582 bp
ATGTTACCTTCGAGACTCATGGTCTCTATGAAGCTTCTGTTGGCACCCCAAATTGCTCCTCTAATTAGAATTGAGGGACGTGCACGCGCTGCTTTTGTTGATGGTGCTCTTCATTGGCCAGCATCGCGGAGGGAAAATAACAATCATTACAATTTTATTTTGGTATTTGATGTCAGCACTGAGTCATTTCGCCCAGGGATAATGATGCCAGACAGTGTAAGAACACTTGTGGAAGTTGAGTCATTGGAATTGTCTCTTTCGAGTGATCAGAAATCCATTGCTTTATTTGTTGAAGACGCTGGTGTTCTTCAGGTTTGGGTATTGAATGATTATGGCAGACCTGAGTCCTGGACCCTATTGATGCAAGAAGCATCATTTGCTTCATTATGTTTCATGAGAAGTGGTGAATTAATACTTGCTGATGATGCTGATGATCTGGAAGGGTACTATGGATTACTTTCACAAAAACCTGTGACCCGAGAACGTAGAAGACTTGAGGTTACTGGATATGAGGACTACACTGTGGATTCTTATGGTCAGACCCTCCAACTACTCAACGAGGAGAATGCAAGTTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

194

Amino Acids

21.86

Weight (kDa)

4.62

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 30 - 130 9.5e-11 F-box associated beta propeller domain
FBA_3 PF08268 30 - 173 3.8e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AccII CGCG 2 cut(s) 87, 127
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 1 cut(s) 446
AgsI TTSAA 2 cut(s) 293, 325
AhdI GACNNNNNGTC 1 cut(s) 20
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 193, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 2 cut(s) 85, 109
Alw26I GTCTC 3 cut(s) 7, 28, 258
Alw44I GTGCAC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 89
AseI ATTAAT 1 cut(s) 410
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 300, 496
Bbv12I GWGCWC 2 cut(s) 85, 109
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 195, 349
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 3 cut(s) 7, 28, 258
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 195, 349
Bme18I GGWCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 45, 353
BmrFI CCNGG 2 cut(s) 195, 349
BmsI GCATC 5 cut(s) 131, 195, 351, 380, 415
BoxI GACNNNNGTC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 300, 496
BpuEI CTTGAG 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 193, 194
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 195, 349
BseDI CCNNGG 2 cut(s) 193, 194
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 171, 333
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 2 cut(s) 48, 575
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 87, 127
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 85, 109
BsiHKCI CYCGRG 1 cut(s) 477
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 3 cut(s) 7, 28, 258
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 85, 109
Bsp143I GATC 2 cut(s) 265, 433
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 172, 334
BspFNI CGCG 2 cut(s) 87, 127
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 45, 353
BspQI GCTCTTC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 193, 194
BssMI GATC 2 cut(s) 265, 433
Bst2UI CCWGG 2 cut(s) 195, 349
Bst4CI ACNGT 2 cut(s) 215, 523
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 2 cut(s) 89, 377
BstC8I GCNNGC 2 cut(s) 85, 120
BstDEI CTNAG 2 cut(s) 180, 342
BstFNI CGCG 2 cut(s) 87, 127
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 268, 436
BstMAI GTCTC 3 cut(s) 7, 28, 258
BstMBI GATC 2 cut(s) 265, 433
BstMWI GCNNNNNNNGC 4 cut(s) 89, 124, 377, 425
BstNI CCWGG 2 cut(s) 195, 349
BstPAI GACNNNNGTC 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 193, 347
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 2 cut(s) 87, 127
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 2 cut(s) 300, 496
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 177, 220, 519
Cac8I GCNNGC 2 cut(s) 85, 120
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 351
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 445
CviAII CATG 2 cut(s) 19, 394
CviJI RGCY 2 cut(s) 34, 118
CviKI_1 RGCY 2 cut(s) 34, 118
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 180, 342
DpnI GATC 2 cut(s) 267, 435
DpnII GATC 2 cut(s) 265, 433
DriI GACNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 193, 347
FaeI CATG 2 cut(s) 22, 397
FaiI YATR 8 cut(s) 20, 29, 333, 388, 395, 450, 510, 534
FaqI GGGAC 1 cut(s) 90
FatI CATG 2 cut(s) 18, 393
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 118
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 22, 397
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 5 cut(s) 15, 182, 239, 344, 527
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 270, 540
Hpy188III TCNNGA 3 cut(s) 12, 394, 437
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 18, 434
HpyCH4III ACNGT 2 cut(s) 215, 523
HpyCH4IV ACGT 2 cut(s) 79, 484
HpyCH4V TGCA 3 cut(s) 83, 364, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 124, 377, 425
HpyF3I CTNAG 2 cut(s) 180, 342
HpySE526I ACGT 2 cut(s) 79, 484
Hsp92II CATG 2 cut(s) 22, 397
HspAI GCGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 433
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 5 cut(s) 131, 195, 351, 380, 415
MaeII ACGT 2 cut(s) 79, 484
MaeIII GTNAC 3 cut(s) 3, 472, 499
MalI GATC 2 cut(s) 267, 435
MboI GATC 2 cut(s) 265, 433
MboII GAAGA 4 cut(s) 101, 299, 305, 501
MhlI GDGCHC 2 cut(s) 85, 109
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 6 cut(s) 51, 63, 69, 151, 248, 407
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 4 cut(s) 9, 191, 248, 353
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 7 cut(s) 67, 69, 123, 490, 505, 553, 554
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 195, 349
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 2 cut(s) 195, 349
MvnI CGCG 2 cut(s) 87, 127
MwoI GCNNNNNNNGC 4 cut(s) 89, 124, 377, 425
NdeII GATC 2 cut(s) 265, 433
NlaIII CATG 2 cut(s) 22, 397
NlaIV GGNNCC 2 cut(s) 45, 353
NmuCI GTSAC 1 cut(s) 472
PagI TCATGA 1 cut(s) 393
PasI CCCWGGG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 114
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 347
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 4 cut(s) 9, 190, 247, 352
PpsI GAGTC 4 cut(s) 9, 190, 247, 352
PshAI GACNNNNGTC 1 cut(s) 343
PshBI ATTAAT 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 193, 347
PspGI CCWGG 2 cut(s) 193, 347
PspN4I GGNNCC 2 cut(s) 45, 353
PspPI GGNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 265, 433
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 4 cut(s) 9, 191, 248, 353
ScrFI CCNGG 2 cut(s) 195, 349
SduI GDGCHC 2 cut(s) 85, 109
SetI ASST 8 cut(s) 10, 36, 82, 315, 343, 472, 487, 501
SfaNI GCATC 5 cut(s) 131, 195, 351, 380, 415
SinI GGWCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 6 cut(s) 51, 63, 69, 151, 248, 407
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 193, 347
TaaI ACNGT 2 cut(s) 215, 523
TaiI ACGT 2 cut(s) 82, 487
TaqI TCGA 2 cut(s) 11, 260
TasI AATT 6 cut(s) 51, 63, 69, 151, 248, 407
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 3 cut(s) 184, 220, 526
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 4 cut(s) 44, 101, 372, 382
TspRI CASTG 3 cut(s) 184, 220, 526
VneI GTGCAC 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 351
VspI ATTAAT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.