Rh5DG382500

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019416
Physical Location & Seq
Reverse (-)
58478679 .. 58479866
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG382500.1

Sequence Viewer

Length: 1188 bp
ATGTGGCTGGAAACTGAAGGAATTATTCCCCTTCTTCCTCAGGAGATCAGACTAAACATCTTGTTTAGGCTACCAGTAGAGTGCTTGATCAGATGCACCTCTGTGCGCAAGTCTTGGAGAACAGTGATAAAAGACCAGAGCTTCATCGGAGACTACAACAGCTGTGCAAAGAATTCTGCTATCGAGAATGGTACTCAACTGTTATTGGTCCATGGTACTACTGTTACCTTCGAGGTCGAAGGGGAAACCGTTTCCCGTGTATTAGGAAATGAAGTTTACTCCTTGCACTATGATGACCCCACTTTTCTTGAGCACAGCAGGATTCGAGTCCCAGTTGGTCCTAGGTGGAATATATGTTTTCGTGTTGCTGGCATTTGTGATGGCATAGTTTTGCTTGCAGATGATGTCCGTATATATGGTTACAACTTCATATTATGCAATCCATTCCTAAGAAAGTCGGTTATCCTTCCCCATCCTAATGTTACCTTCGAGACTCATGGTCTCTATGAAGCTTCTGTTGGGTTTGGTCATGATGCTATGAACAATGACTATAAGGTTGTGATACTTGCCAGTCTTTTGGATGAATTACCGGGTAGTGAATGTCGAACTGTTGTTGAGCTTTATTCACTTGTTGCACACTCTTGGAAGCACCCTCAAATTGCTCCTCTAATTAGAATTGAGGGACGTGCACGCGCTGCTTTTGTTGATGGTGCTCTTCATTGGCCAGCATCGCGGAGGGAAAATAACAATCATTACAATTTTATTTTGGTATTTGATGTCAGCACTGAGTCATTTCGCCCAGAGATAATGATGCCAGAGAGTGTAAGAACACTTGTGGAAGTTGAGTCATTGGAATTGTCTCTTTCGAGTGATCAGAAATCCATTGCTTTATTTGTTGAAGACGCTGGTGTTCTTCAGGTTTGGGTATTGAATGATTATGGCAGGCCTGAGTCCTGGACCCTATTGATGCAAGTAGCATCATTTGCTTCATTATGTTTCATGAGAAGTGGTGAATTAATACTTGCTGATGATGCTGATGATCTGGAAGGGTACTATGGATTACTTTCACAAAAACCTGTGACCCGAGAACGTAGAAGACTTGAGGTTACTGGATATGAGGACTACACTGTGGATTCTTATGGTCAGACCCTCCAATTACTCAACGAGGAGAATGCAAGTTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

395

Amino Acids

44.81

Weight (kDa)

4.96

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 123 - 326 2.9e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 125 - 332 1.4e-20 F-box associated beta propeller domain
FBA_3 PF08268 139 - 344 4.5e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccII CGCG 2 cut(s) 693, 733
AciI CCGC 1 cut(s) 733
AcoI YGGCCR 1 cut(s) 722
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 36, 899
AfaI GTAC 3 cut(s) 193, 217, 1052
AgsI TTSAA 2 cut(s) 899, 931
AhdI GACNNNNNGTC 1 cut(s) 498
AjiI CACGTC 1 cut(s) 686
AjnI CCWGG 1 cut(s) 953
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 4 cut(s) 141, 162, 512, 619
AluI AGCT 4 cut(s) 141, 162, 512, 619
Alw21I GWGCWC 3 cut(s) 315, 691, 715
Alw26I GTCTC 4 cut(s) 144, 485, 506, 864
Alw44I GTGCAC 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 1083
AoxI GGCC 2 cut(s) 722, 944
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 1 cut(s) 172
AseI ATTAAT 1 cut(s) 1016
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 2 cut(s) 108, 695
AspS9I GGNCC 3 cut(s) 208, 338, 957
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 3 cut(s) 208, 338, 957
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 691
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 906, 1102
Bbv12I GWGCWC 3 cut(s) 315, 691, 715
BbvI GCAGC 1 cut(s) 682
BccI CCATC 3 cut(s) 374, 480, 701
BcgI CGANNNNNNTGC 2 cut(s) 1154, 1188
BciT130I CCWGG 1 cut(s) 955
BclI TGATCA 2 cut(s) 87, 871
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 4 cut(s) 144, 485, 506, 864
BfaI CTAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 696
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 591, 955
Bme18I GGWCC 3 cut(s) 208, 338, 957
BmeRI GACNNNNNGTC 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 1083
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 3 cut(s) 208, 338, 957
BmiI GGNNCC 1 cut(s) 959
BmrFI CCNGG 2 cut(s) 591, 955
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 7 cut(s) 83, 523, 737, 801, 957, 986, 1021
BmuI ACTGGG 1 cut(s) 326
BpiI GAAGAC 2 cut(s) 906, 1102
BpuEI CTTGAG 2 cut(s) 329, 1121
BpuMI CCSGG 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 2 cut(s) 211, 341
Bse1I ACTGG 4 cut(s) 74, 332, 570, 1114
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 955
BseDI CCNNGG 2 cut(s) 211, 341
BseGI GGATG 2 cut(s) 472, 586
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 53, 777, 939
BseNI ACTGG 4 cut(s) 74, 332, 570, 1114
BseRI GAGGAG 2 cut(s) 654, 1181
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 693, 733
BshFI GGCC 2 cut(s) 724, 946
BsiHKAI GWGCWC 3 cut(s) 315, 691, 715
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 2 cut(s) 314, 696
BsmAI GTCTC 4 cut(s) 144, 485, 506, 864
BsmFI GGGAC 2 cut(s) 314, 696
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 2 cut(s) 724, 946
Bso31I GGTCTC 1 cut(s) 506
BsoBI CYCGRG 1 cut(s) 1083
Bsp1286I GDGCHC 3 cut(s) 315, 691, 715
Bsp143I GATC 4 cut(s) 45, 87, 871, 1039
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 1 cut(s) 733
BspANI GGCC 2 cut(s) 724, 946
BspCNI CTCAG 3 cut(s) 52, 778, 940
BspFNI CGCG 2 cut(s) 693, 733
BspHI TCATGA 2 cut(s) 529, 999
BspLI GGNNCC 1 cut(s) 959
BspQI GCTCTTC 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 4 cut(s) 74, 332, 570, 1114
BssECI CCNNGG 2 cut(s) 211, 341
BssMI GATC 4 cut(s) 45, 87, 871, 1039
BssT1I CCWWGG 2 cut(s) 211, 341
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 6 cut(s) 124, 201, 223, 250, 610, 1129
Bst6I CTCTTC 1 cut(s) 720
BstAPI GCANNNNNTGC 2 cut(s) 695, 983
BstC8I GCNNGC 5 cut(s) 370, 396, 691, 726, 944
BstDEI CTNAG 4 cut(s) 39, 449, 786, 948
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 472, 586
BstFNI CGCG 2 cut(s) 693, 733
BstHHI GCGC 2 cut(s) 108, 695
BstKTI GATC 4 cut(s) 48, 90, 874, 1042
BstMAI GTCTC 4 cut(s) 144, 485, 506, 864
BstMBI GATC 4 cut(s) 45, 87, 871, 1039
BstMWI GCNNNNNNNGC 4 cut(s) 695, 730, 983, 1031
BstNI CCWGG 1 cut(s) 955
BstSCI CCNGG 2 cut(s) 589, 953
BstSLI GKGCMC 1 cut(s) 691
BstUI CGCG 2 cut(s) 693, 733
BstV1I GCAGC 1 cut(s) 682
BstV2I GAAGAC 2 cut(s) 906, 1102
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 724, 946
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 2 cut(s) 472, 586
BtsIMutI CAGTG 3 cut(s) 129, 783, 1125
Cac8I GCNNGC 5 cut(s) 370, 396, 691, 726, 944
CciI TCATGA 2 cut(s) 529, 999
CfoI GCGC 2 cut(s) 108, 695
Cfr13I GGNCC 3 cut(s) 208, 338, 957
CseI GACGC 1 cut(s) 911
Csp6I GTAC 3 cut(s) 192, 216, 1051
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 212, 497, 530, 1000
CviJI RGCY 8 cut(s) 7, 70, 141, 162, 512, 619, 724, 946
CviKI_1 RGCY 8 cut(s) 7, 70, 141, 162, 512, 619, 724, 946
CviQI GTAC 3 cut(s) 192, 216, 1051
DdeI CTNAG 4 cut(s) 39, 449, 786, 948
DpnI GATC 4 cut(s) 47, 89, 873, 1041
DpnII GATC 4 cut(s) 45, 87, 871, 1039
DriI GACNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 2 cut(s) 211, 341
Eco147I AGGCCT 1 cut(s) 946
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 3 cut(s) 208, 338, 957
Eco57I CTGAAG 2 cut(s) 36, 899
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 1083
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 953
EcoT14I CCWWGG 2 cut(s) 211, 341
ErhI CCWWGG 2 cut(s) 211, 341
FaeI CATG 4 cut(s) 215, 500, 533, 1003
FaqI GGGAC 2 cut(s) 314, 696
FatI CATG 4 cut(s) 211, 496, 529, 999
FbaI TGATCA 2 cut(s) 87, 871
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 2 cut(s) 459, 593
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 1 cut(s) 342
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 694
GluI GCNGC 1 cut(s) 696
HaeIII GGCC 2 cut(s) 724, 946
HapII CCGG 1 cut(s) 590
HgaI GACGC 1 cut(s) 911
HhaI GCGC 2 cut(s) 108, 695
Hin1II CATG 4 cut(s) 215, 500, 533, 1003
Hin6I GCGC 2 cut(s) 106, 693
HinP1I GCGC 2 cut(s) 106, 693
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 7 cut(s) 322, 327, 493, 788, 845, 950, 1133
HpaII CCGG 1 cut(s) 590
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 2 cut(s) 277, 689
Hpy188I TCNGA 5 cut(s) 50, 92, 149, 876, 1146
Hpy188III TCNNGA 7 cut(s) 41, 184, 308, 490, 530, 1000, 1043
Hpy8I GTNNAC 2 cut(s) 277, 689
HpyAV CCTTC 7 cut(s) 11, 41, 233, 238, 476, 496, 1040
HpyCH4III ACNGT 6 cut(s) 124, 201, 223, 250, 610, 1129
HpyCH4IV ACGT 2 cut(s) 685, 1090
HpyCH4V TGCA 9 cut(s) 96, 167, 286, 398, 438, 635, 689, 970, 1175
HpyF10VI GCNNNNNNNGC 4 cut(s) 695, 730, 983, 1031
HpyF3I CTNAG 4 cut(s) 39, 449, 786, 948
HpySE526I ACGT 2 cut(s) 685, 1090
Hsp92II CATG 4 cut(s) 215, 500, 533, 1003
HspAI GCGC 2 cut(s) 106, 693
Ksp22I TGATCA 2 cut(s) 87, 871
Kzo9I GATC 4 cut(s) 45, 87, 871, 1039
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 667
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 7 cut(s) 83, 523, 737, 801, 957, 986, 1021
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 685, 1090
MaeIII GTNAC 5 cut(s) 223, 419, 481, 1078, 1105
MalI GATC 4 cut(s) 47, 89, 873, 1041
MboI GATC 4 cut(s) 45, 87, 871, 1039
MboII GAAGA 5 cut(s) 26, 707, 905, 911, 1107
MhlI GDGCHC 3 cut(s) 315, 691, 715
MlsI TGGCCA 1 cut(s) 724
MluNI TGGCCA 1 cut(s) 724
MlyI GAGTC 5 cut(s) 336, 487, 797, 854, 959
Mox20I TGGCCA 1 cut(s) 724
MscI TGGCCA 1 cut(s) 724
MseI TTAA 1 cut(s) 1016
MslI CAYNNNNRTG 3 cut(s) 101, 291, 477
Msp20I TGGCCA 1 cut(s) 724
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 591, 955
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 1 cut(s) 955
MvnI CGCG 2 cut(s) 693, 733
MwoI GCNNNNNNNGC 4 cut(s) 695, 730, 983, 1031
NciI CCSGG 1 cut(s) 591
NcoI CCATGG 1 cut(s) 211
NdeII GATC 4 cut(s) 45, 87, 871, 1039
NlaIII CATG 4 cut(s) 215, 500, 533, 1003
NlaIV GGNNCC 1 cut(s) 959
NmuCI GTSAC 1 cut(s) 1078
NsbI TGCGCA 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 101
PagI TCATGA 2 cut(s) 529, 999
PceI AGGCCT 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 720
PctI GAATGC 1 cut(s) 1177
PfeI GAWTC 2 cut(s) 322, 1133
PfoI TCCNGGA 1 cut(s) 953
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 5 cut(s) 335, 487, 796, 853, 958
PpsI GAGTC 5 cut(s) 335, 487, 796, 853, 958
PshBI ATTAAT 1 cut(s) 1016
Psp6I CCWGG 1 cut(s) 953
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 1 cut(s) 959
PspPI GGNCC 3 cut(s) 208, 338, 957
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 3 cut(s) 193, 217, 1052
RsaNI GTAC 3 cut(s) 192, 216, 1051
RseI CAYNNNNRTG 3 cut(s) 101, 291, 477
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 1 cut(s) 1016
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 4 cut(s) 45, 87, 871, 1039
Sau96I GGNCC 3 cut(s) 208, 338, 957
SchI GAGTC 5 cut(s) 336, 487, 797, 854, 959
ScrFI CCNGG 2 cut(s) 591, 955
SduI GDGCHC 3 cut(s) 315, 691, 715
SfaNI GCATC 7 cut(s) 83, 523, 737, 801, 957, 986, 1021
SinI GGWCC 3 cut(s) 208, 338, 957
SmiMI CAYNNNNRTG 3 cut(s) 101, 291, 477
SmlI CTYRAG 2 cut(s) 308, 1100
SmoI CTYRAG 2 cut(s) 308, 1100
SseBI AGGCCT 1 cut(s) 946
SsiI CCGC 1 cut(s) 733
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 946
StyD4I CCNGG 2 cut(s) 589, 953
StyI CCWWGG 2 cut(s) 211, 341
TaaI ACNGT 6 cut(s) 124, 201, 223, 250, 610, 1129
TaiI ACGT 2 cut(s) 688, 1093
TaqI TCGA 7 cut(s) 183, 231, 237, 325, 489, 604, 866
TfiI GAWTC 2 cut(s) 322, 1133
Tru1I TTAA 1 cut(s) 1016
Tru9I TTAA 1 cut(s) 1016
TscAI CASTG 3 cut(s) 129, 790, 1132
TseFI GTSAC 1 cut(s) 1078
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 1 cut(s) 1078
TspDTI ATGAA 9 cut(s) 133, 285, 418, 522, 554, 597, 707, 978, 988
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 3 cut(s) 129, 790, 1132
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 3 cut(s) 208, 338, 957
VspI ATTAAT 1 cut(s) 1016
XapI RAATTY 1 cut(s) 172
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.