Rh5CG391700

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019416
Physical Location & Seq
Reverse (-)
51557492 .. 51559280
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG391700.1

Sequence Viewer

Length: 1302 bp
ATGAGATGGATCAAATCGTCCAGCGGACACAGAGAGCATCTTGTGCTCCATTGGTGTTTGTGCTACCGAAGAAGAGAGGGTTCAATGTCTCAGAAAAGCGCAGCCTCGTTGGAGAACTTGGAATCTGAAGGAATGATTCCGCATCTTCCTCAGGAGATCAGACTAAACATCTTGTTTAGGCTACCAGTAGAGGGCTTGATCAGATGCACCTCTGTGCGCAAGTCTTGGAGAACAGTGATAAAAGACCAGAGCTTCATCGGAGACTATAACAGCTGTGCAAAGAATTCTGCTATCGAGAATGGTACTCAACTGTTATTGGTCCATGGTACTGCTTTTACCTTTGAGGTCGAAAGGGGAATCGTTTCCGGTGCATTATTAGGAGATGAAGTTTACTCCTTGCACTATGATGACCCCACTTTTCTTGAGCACAGCAGGATTCGAGTTCCAGTTGTTCCTAGGTGGAATATATGTTTTCGTGTTGCTGGCATTTGCGATGGCATAGTTTTGCTTGCAGATGATGTACGTATATACGGTTACAACTTCATATTATGCAATCCATTCCTAAGAAAGTCGGTTATCCTTCCCCATCCTAATGTTACCTTCGAGACTCATGGTCTCTATGAAGCTTCTGTTGGGTTTGGTCATGATGCTATGAAAAATGACTATAAGGTTGTGATGCTTGCCAGTCTTTTGGATGAATTACCGGGTAGTGAAAGTCGAACTGTTGTTGAGGTTTATTCACTTGTTGCACACTCTTGGAAGGACCCTCAAATTGCTCCTCTAATTAGAATTGAGGGACGTGCACGTGCTGCTTTTTTTGATGGTGCTCTTCATTGGCCAGCATCGCGGAGGGAAAATAACAATTGTTGCAATTTTATTTTGGTATTTGATGTCAGCACTGAATCATTTCGCCCAGAGATAATGATGCCAGAGAGTGTAAGAACACTCGTGGAAGTCAAGTCTTTGGAATTGTCTCTTTCGAGTGATCAGAAATCCATTGCTTTATTCGTTGAAGACGCTGATGTTCTTCAGGTTTGGGTGTTGAATGATTATGGCAGGCCTGAGTCCTGGACCCTTTTGATGCAAGAAGCACCATTTACTTCATTATGTTTCATGAGAAGTGGTGAATTATTACTTGCTGATGTTGCTGATGATCTGGAAGGGTACTATGGATTACTTTCGCAAAAACCTGTGACCCGAGAACGTAGAAGACTTGAGCTTACTGGATATGAGGACTACACTGTGGATTCTTATGGTCAGACCCTCCAATTACTCAACGAGGAGAATGCAAGATCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

433

Amino Acids

49.3

Weight (kDa)

5.47

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 161 - 362 2.6e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 163 - 369 7.7e-21 F-box associated beta propeller domain
FBA_3 PF08268 177 - 380 2.5e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
AccII CGCG 1 cut(s) 847
AciI CCGC 3 cut(s) 24, 140, 847
AclWI GGATC 2 cut(s) 17, 1287
AcoI YGGCCR 1 cut(s) 836
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 147, 1013
AcvI CACGTG 1 cut(s) 806
AfaI GTAC 4 cut(s) 304, 328, 522, 1166
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 84, 1013, 1045
AhdI GACNNNNNGTC 1 cut(s) 612
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 1 cut(s) 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AleI CACNNNNGTG 1 cut(s) 212
AluBI AGCT 4 cut(s) 252, 273, 626, 1219
AluI AGCT 4 cut(s) 252, 273, 626, 1219
Alw21I GWGCWC 4 cut(s) 48, 429, 805, 829
Alw26I GTCTC 5 cut(s) 93, 255, 599, 620, 978
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 2 cut(s) 17, 1287
Ama87I CYCGRG 1 cut(s) 1197
AoxI GGCC 2 cut(s) 836, 1058
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 2 cut(s) 101, 809
ApoI RAATTY 1 cut(s) 283
Asp700I GAANNNNTTC 2 cut(s) 361, 906
AspA2I CCTAGG 1 cut(s) 455
AspLEI GCGC 2 cut(s) 101, 219
AspS9I GGNCC 3 cut(s) 319, 763, 1071
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 1136
AvaI CYCGRG 1 cut(s) 1197
AvaII GGWCC 3 cut(s) 319, 763, 1071
AvrII CCTAGG 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 838
BauI CACGAG 1 cut(s) 947
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 2 cut(s) 1020, 1216
Bbv12I GWGCWC 4 cut(s) 48, 429, 805, 829
BbvI GCAGC 2 cut(s) 113, 796
BccI CCATC 3 cut(s) 488, 594, 815
BcgI CGANNNNNNTGC 2 cut(s) 1268, 1302
BciT130I CCWGG 1 cut(s) 1069
BclI TGATCA 2 cut(s) 198, 985
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 5 cut(s) 93, 255, 599, 620, 978
BfaI CTAG 1 cut(s) 456
BisI GCNGC 2 cut(s) 102, 810
BlnI CCTAGG 1 cut(s) 455
BlsI GCNGC 2 cut(s) 103, 811
Bme1390I CCNGG 2 cut(s) 705, 1069
Bme18I GGWCC 3 cut(s) 319, 763, 1071
BmeRI GACNNNNNGTC 1 cut(s) 612
BmeT110I CYCGRG 1 cut(s) 1197
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 3 cut(s) 319, 763, 1071
BmiI GGNNCC 2 cut(s) 765, 1073
BmrFI CCNGG 2 cut(s) 705, 1069
BmsI GCATC 8 cut(s) 46, 151, 194, 637, 666, 851, 915, 1071
BpiI GAAGAC 2 cut(s) 1020, 1216
BpuEI CTTGAG 2 cut(s) 443, 1235
BpuMI CCSGG 1 cut(s) 705
BsaAI YACGTR 2 cut(s) 524, 806
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 322, 455
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 4 cut(s) 185, 446, 684, 1228
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 1 cut(s) 1069
BseDI CCNNGG 2 cut(s) 322, 455
BseGI GGATG 2 cut(s) 586, 700
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 3 cut(s) 104, 164, 1053
BseNI ACTGG 4 cut(s) 185, 446, 684, 1228
BseRI GAGGAG 2 cut(s) 768, 1295
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 2 cut(s) 113, 796
Bsh1236I CGCG 1 cut(s) 847
BshFI GGCC 2 cut(s) 838, 1060
BsiHKAI GWGCWC 4 cut(s) 48, 429, 805, 829
BsiHKCI CYCGRG 1 cut(s) 1197
BsiSI CCGG 2 cut(s) 366, 704
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 5 cut(s) 93, 255, 599, 620, 978
BsmFI GGGAC 1 cut(s) 810
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 2 cut(s) 838, 1060
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 1197
Bsp1286I GDGCHC 4 cut(s) 48, 429, 805, 829
Bsp143I GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 3 cut(s) 24, 140, 847
BspANI GGCC 2 cut(s) 838, 1060
BspCNI CTCAG 3 cut(s) 103, 163, 1054
BspFNI CGCG 1 cut(s) 847
BspHI TCATGA 2 cut(s) 643, 1113
BspLI GGNNCC 2 cut(s) 765, 1073
BspPI GGATC 2 cut(s) 17, 1287
BspQI GCTCTTC 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 4 cut(s) 185, 446, 684, 1228
BssECI CCNNGG 2 cut(s) 322, 455
BssMI GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
BssSI CACGAG 1 cut(s) 947
BssT1I CCWWGG 2 cut(s) 322, 455
Bst2BI CACGAG 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 1069
Bst4CI ACNGT 5 cut(s) 235, 312, 533, 724, 1243
Bst6I CTCTTC 2 cut(s) 67, 834
BstAPI GCANNNNNTGC 2 cut(s) 43, 809
BstBAI YACGTR 2 cut(s) 524, 806
BstC8I GCNNGC 5 cut(s) 484, 510, 681, 840, 1058
BstDEI CTNAG 4 cut(s) 90, 150, 563, 1062
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 586, 700
BstFNI CGCG 1 cut(s) 847
BstHHI GCGC 2 cut(s) 101, 219
BstKTI GATC 6 cut(s) 12, 159, 201, 988, 1156, 1295
BstMAI GTCTC 5 cut(s) 93, 255, 599, 620, 978
BstMBI GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
BstMWI GCNNNNNNNGC 4 cut(s) 43, 809, 844, 1145
BstNI CCWGG 1 cut(s) 1069
BstSCI CCNGG 2 cut(s) 703, 1067
BstSLI GKGCMC 1 cut(s) 805
BstSNI TACGTA 1 cut(s) 524
BstUI CGCG 1 cut(s) 847
BstV1I GCAGC 2 cut(s) 113, 796
BstV2I GAAGAC 2 cut(s) 1020, 1216
BstX2I RGATCY 1 cut(s) 1292
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 1 cut(s) 1292
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 838, 1060
BtgI CCRYGG 1 cut(s) 322
BtgZI GCGATG 2 cut(s) 507, 828
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 2 cut(s) 586, 700
BtsIMutI CAGTG 3 cut(s) 240, 897, 1239
Cac8I GCNNGC 5 cut(s) 484, 510, 681, 840, 1058
CciI TCATGA 2 cut(s) 643, 1113
CfoI GCGC 2 cut(s) 101, 219
Cfr13I GGNCC 3 cut(s) 319, 763, 1071
CseI GACGC 1 cut(s) 1025
Csp6I GTAC 4 cut(s) 303, 327, 521, 1165
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 4 cut(s) 323, 611, 644, 1114
CviJI RGCY 9 cut(s) 104, 181, 195, 252, 273, 626, 838, 1060, 1219
CviKI_1 RGCY 9 cut(s) 104, 181, 195, 252, 273, 626, 838, 1060, 1219
CviQI GTAC 4 cut(s) 303, 327, 521, 1165
DdeI CTNAG 4 cut(s) 90, 150, 563, 1062
DpnI GATC 6 cut(s) 11, 158, 200, 987, 1155, 1294
DpnII GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
DriI GACNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 67, 834
Eam1105I GACNNNNNGTC 1 cut(s) 612
EarI CTCTTC 2 cut(s) 67, 834
Eco105I TACGTA 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 322, 455
Eco147I AGGCCT 1 cut(s) 1060
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 3 cut(s) 319, 763, 1071
Eco57I CTGAAG 2 cut(s) 147, 1013
Eco72I CACGTG 1 cut(s) 806
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 1197
EcoO109I RGGNCCY 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 1067
EcoT14I CCWWGG 2 cut(s) 322, 455
ErhI CCWWGG 2 cut(s) 322, 455
FaeI CATG 4 cut(s) 326, 614, 647, 1117
FaqI GGGAC 1 cut(s) 810
FatI CATG 4 cut(s) 322, 610, 643, 1113
FbaI TGATCA 2 cut(s) 198, 985
Fnu4HI GCNGC 2 cut(s) 102, 810
FokI GGATG 2 cut(s) 573, 707
Fsp4HI GCNGC 2 cut(s) 102, 810
FspBI CTAG 1 cut(s) 456
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 2 cut(s) 100, 218
GluI GCNGC 2 cut(s) 102, 810
HaeIII GGCC 2 cut(s) 838, 1060
HapII CCGG 2 cut(s) 366, 704
HgaI GACGC 1 cut(s) 1025
HhaI GCGC 2 cut(s) 101, 219
Hin1II CATG 4 cut(s) 326, 614, 647, 1117
Hin6I GCGC 2 cut(s) 99, 217
HinP1I GCGC 2 cut(s) 99, 217
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 8 cut(s) 122, 136, 357, 436, 607, 902, 1064, 1247
HpaII CCGG 2 cut(s) 366, 704
HphI GGTGA 1 cut(s) 1136
Hpy166II GTNNAC 2 cut(s) 391, 803
Hpy188I TCNGA 7 cut(s) 93, 127, 161, 203, 260, 990, 1260
Hpy188III TCNNGA 7 cut(s) 152, 295, 422, 604, 644, 1114, 1157
Hpy8I GTNNAC 2 cut(s) 391, 803
HpyAV CCTTC 5 cut(s) 122, 590, 610, 754, 1154
HpyCH4III ACNGT 5 cut(s) 235, 312, 533, 724, 1243
HpyCH4IV ACGT 4 cut(s) 523, 799, 805, 1204
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 809, 844, 1145
HpyF3I CTNAG 4 cut(s) 90, 150, 563, 1062
HpySE526I ACGT 4 cut(s) 523, 799, 805, 1204
Hsp92II CATG 4 cut(s) 326, 614, 647, 1117
HspAI GCGC 2 cut(s) 99, 217
Ksp22I TGATCA 2 cut(s) 198, 985
Kzo9I GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 51, 781
Lsp1109I GCAGC 2 cut(s) 113, 796
LweI GCATC 8 cut(s) 46, 151, 194, 637, 666, 851, 915, 1071
MaeI CTAG 1 cut(s) 456
MaeII ACGT 4 cut(s) 523, 799, 805, 1204
MaeIII GTNAC 3 cut(s) 533, 595, 1192
MalI GATC 6 cut(s) 11, 158, 200, 987, 1155, 1294
MboI GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
MboII GAAGA 7 cut(s) 81, 84, 137, 821, 1019, 1025, 1221
MfeI CAATTG 1 cut(s) 862
MflI RGATCY 1 cut(s) 1292
MhlI GDGCHC 4 cut(s) 48, 429, 805, 829
MlsI TGGCCA 1 cut(s) 838
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 2 cut(s) 601, 1073
MmeI TCCRAC 1 cut(s) 90
Mox20I TGGCCA 1 cut(s) 838
MroXI GAANNNNTTC 2 cut(s) 361, 906
MscI TGGCCA 1 cut(s) 838
MslI CAYNNNNRTG 3 cut(s) 212, 405, 591
Msp20I TGGCCA 1 cut(s) 838
MspA1I CMGCKG 2 cut(s) 24, 273
MspI CCGG 2 cut(s) 366, 704
MspR9I CCNGG 2 cut(s) 705, 1069
MunI CAATTG 1 cut(s) 862
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 1 cut(s) 1069
MvnI CGCG 1 cut(s) 847
MwoI GCNNNNNNNGC 4 cut(s) 43, 809, 844, 1145
NciI CCSGG 1 cut(s) 705
NcoI CCATGG 1 cut(s) 322
NdeII GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
NlaIII CATG 4 cut(s) 326, 614, 647, 1117
NlaIV GGNNCC 2 cut(s) 765, 1073
NmuCI GTSAC 1 cut(s) 1192
NsbI TGCGCA 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 212
PagI TCATGA 2 cut(s) 643, 1113
PceI AGGCCT 1 cut(s) 1060
PciSI GCTCTTC 1 cut(s) 834
PctI GAATGC 1 cut(s) 1291
PdmI GAANNNNTTC 2 cut(s) 361, 906
PfeI GAWTC 6 cut(s) 122, 136, 357, 436, 902, 1247
PfoI TCCNGGA 1 cut(s) 1067
PkrI GCNGC 2 cut(s) 103, 811
PleI GAGTC 2 cut(s) 601, 1072
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 2 cut(s) 601, 1072
Ppu21I YACGTR 2 cut(s) 524, 806
PpuMI RGGWCCY 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 1067
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 1 cut(s) 1067
PspN4I GGNNCC 2 cut(s) 765, 1073
PspPI GGNCC 3 cut(s) 319, 763, 1071
PspPPI RGGWCCY 1 cut(s) 763
PsuI RGATCY 1 cut(s) 1292
PvuII CAGCTG 1 cut(s) 273
RsaI GTAC 4 cut(s) 304, 328, 522, 1166
RsaNI GTAC 4 cut(s) 303, 327, 521, 1165
RseI CAYNNNNRTG 3 cut(s) 212, 405, 591
SapI GCTCTTC 1 cut(s) 834
SatI GCNGC 2 cut(s) 102, 810
Sau3AI GATC 6 cut(s) 9, 156, 198, 985, 1153, 1292
Sau96I GGNCC 3 cut(s) 319, 763, 1071
SchI GAGTC 2 cut(s) 601, 1073
ScrFI CCNGG 2 cut(s) 705, 1069
SduI GDGCHC 4 cut(s) 48, 429, 805, 829
SfaNI GCATC 8 cut(s) 46, 151, 194, 637, 666, 851, 915, 1071
SinI GGWCC 3 cut(s) 319, 763, 1071
SmiMI CAYNNNNRTG 3 cut(s) 212, 405, 591
SmlI CTYRAG 2 cut(s) 422, 1214
SmoI CTYRAG 2 cut(s) 422, 1214
SnaBI TACGTA 1 cut(s) 524
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 3 cut(s) 24, 140, 847
SspMI CTAG 1 cut(s) 456
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 2 cut(s) 703, 1067
StyI CCWWGG 2 cut(s) 322, 455
TaaI ACNGT 5 cut(s) 235, 312, 533, 724, 1243
TaiI ACGT 4 cut(s) 526, 802, 808, 1207
TaqI TCGA 6 cut(s) 294, 348, 439, 603, 718, 980
TfiI GAWTC 6 cut(s) 122, 136, 357, 436, 902, 1247
TscAI CASTG 3 cut(s) 240, 904, 1246
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 2 cut(s) 101, 809
Tsp45I GTSAC 1 cut(s) 1192
TspDTI ATGAA 9 cut(s) 244, 399, 532, 636, 668, 711, 821, 1092, 1102
TspRI CASTG 3 cut(s) 240, 904, 1246
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 3 cut(s) 319, 763, 1071
XapI RAATTY 1 cut(s) 283
XmaJI CCTAGG 1 cut(s) 455
XmnI GAANNNNTTC 2 cut(s) 361, 906
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.