Rmu_sc0005705.1_g000018

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005705.1
OG0019416
Physical Location & Seq
Forward (+)
54682 .. 56459
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005705.1_g000018.1.cds

Sequence Viewer

Length: 1230 bp
atgtctcacaaaaaagagagactcgttggctcagcctcgttggggaacttggaaactgaaggaattattccccttcttcctcaggagatcagactaaacatcttgtttaggctaccagtagagtgcttgatcagatgcacctctgtgcgcaagtcttggagaacagtgataaaagaccagagcttcatcggagactacaacagctgtgcaaagaattctgctatcgagaatggtactcaactgttattggtccatggtactactgttaccttcgaggtcgaaggggaaaccgtttcccgtgtattaggaaatgaagtttactccttgcactatgatgaccccacttttcttgagcacagcaggattcgagtcccagttggtcctaggtggaatatatgttttcgtgttgctggcatttgtgatggcatagttttgcttgcagatgatgtccgtatatatggttacaacttcatattatgcaatccattcctaagaaagtcggttatccttccccatcctaatgttaccttcgagactcatggtctctatgaagcttctgttgggtttggtcatgatgctatgaacaatgactataaggttgtgatacttgccagtcttttggatgaattaccgggtagtgaatgtcgaactgttgttgagctttattcacttgttgcacactcttggaagcaccctcaaattgctcctctaattagaattgagggacgtgcacgcgctgcttttgttgatggtgctcttcattggccagcatcgcggagggaaaataacaatcattacaattttattttggtatttgatgtcagcactgagtcatttcgcccagagataatgatgccaaagagtgtaagaacacttgtggaagttgagtcattggaattgtctctttcgagtgatcagaaatccattgctttatttgttgaagacgctggtgttcttcaggtttgggtattgaatgattatggcaggcctgagtcctggaccctattgatgcaagtagcatcatttgcttcattatgtttcatgagaagtggtgaattaatacttgctgatgatgctgatgatctggaagggtactatggattactttcacaaaaacctgtgacccgagaacgtagaagacttgaggttactggatatgaggactacactgtggattcttatggtcagaccctccaattactcaacgaggagaatgcaagttcctactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

409

Amino Acids

46.18

Weight (kDa)

5.24

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019416)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0054431
rosa_laevigata RLG00000034931
rosa_multiflora Rmu_sc0005705.1_g000018
rosa_roxburghii Rroxscaffold_1G00026480
rosa_samantha Rh5CG391700 Rh5DG382500
rosa_wichuraiana Rw5G033510 Rw5G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AccII CGCG 2 cut(s) 735, 775
AciI CCGC 1 cut(s) 775
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 78, 941
AfaI GTAC 3 cut(s) 235, 259, 1094
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 941, 973
AhdI GACNNNNNGTC 1 cut(s) 540
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 1 cut(s) 995
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 4 cut(s) 183, 204, 554, 661
AluI AGCT 4 cut(s) 183, 204, 554, 661
Alw21I GWGCWC 3 cut(s) 357, 733, 757
Alw26I GTCTC 6 cut(s) 9, 13, 186, 527, 548, 906
Alw44I GTGCAC 1 cut(s) 729
Ama87I CYCGRG 1 cut(s) 1125
AoxI GGCC 2 cut(s) 764, 986
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 1 cut(s) 214
AseI ATTAAT 1 cut(s) 1058
AspA2I CCTAGG 1 cut(s) 383
AspLEI GCGC 2 cut(s) 150, 737
AspS9I GGNCC 3 cut(s) 250, 380, 999
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 1064
AvaI CYCGRG 1 cut(s) 1125
AvaII GGWCC 3 cut(s) 250, 380, 999
AvrII CCTAGG 1 cut(s) 383
AxyI CCTNAGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 733
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BalI TGGCCA 1 cut(s) 766
BbsI GAAGAC 2 cut(s) 948, 1144
Bbv12I GWGCWC 3 cut(s) 357, 733, 757
BbvI GCAGC 1 cut(s) 724
BccI CCATC 3 cut(s) 416, 522, 743
BcgI CGANNNNNNTGC 2 cut(s) 1196, 1230
BciT130I CCWGG 1 cut(s) 997
BclI TGATCA 2 cut(s) 129, 913
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 6 cut(s) 9, 13, 186, 527, 548, 906
BfaI CTAG 1 cut(s) 384
BisI GCNGC 1 cut(s) 738
BlnI CCTAGG 1 cut(s) 383
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 633, 997
Bme18I GGWCC 3 cut(s) 250, 380, 999
BmeRI GACNNNNNGTC 1 cut(s) 540
BmeT110I CYCGRG 1 cut(s) 1125
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 250, 380, 999
BmiI GGNNCC 1 cut(s) 1001
BmrFI CCNGG 2 cut(s) 633, 997
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 7 cut(s) 125, 565, 779, 843, 999, 1028, 1063
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 948, 1144
Bpu1102I GCTNAGC 1 cut(s) 31
BpuEI CTTGAG 2 cut(s) 371, 1163
BpuMI CCSGG 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 253, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 4 cut(s) 116, 374, 612, 1156
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 924
BseBI CCWGG 1 cut(s) 997
BseDI CCNNGG 2 cut(s) 253, 383
BseGI GGATG 2 cut(s) 514, 628
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 4 cut(s) 45, 95, 819, 981
BseNI ACTGG 4 cut(s) 116, 374, 612, 1156
BseRI GAGGAG 2 cut(s) 696, 1223
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 1 cut(s) 724
Bsh1236I CGCG 2 cut(s) 735, 775
BshFI GGCC 2 cut(s) 766, 988
BsiHKAI GWGCWC 3 cut(s) 357, 733, 757
BsiHKCI CYCGRG 1 cut(s) 1125
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 2 cut(s) 356, 738
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 6 cut(s) 9, 13, 186, 527, 548, 906
BsmFI GGGAC 2 cut(s) 356, 738
BsmI GAATGC 1 cut(s) 1219
BsnI GGCC 2 cut(s) 766, 988
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 1125
Bsp1286I GDGCHC 3 cut(s) 357, 733, 757
Bsp143I GATC 4 cut(s) 87, 129, 913, 1081
Bsp1720I GCTNAGC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 1 cut(s) 775
BspANI GGCC 2 cut(s) 766, 988
BspCNI CTCAG 4 cut(s) 44, 94, 820, 982
BspFNI CGCG 2 cut(s) 735, 775
BspHI TCATGA 2 cut(s) 571, 1041
BspLI GGNNCC 1 cut(s) 1001
BspQI GCTCTTC 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 4 cut(s) 116, 374, 612, 1156
BssECI CCNNGG 2 cut(s) 253, 383
BssMI GATC 4 cut(s) 87, 129, 913, 1081
BssT1I CCWWGG 2 cut(s) 253, 383
Bst2UI CCWGG 1 cut(s) 997
Bst4CI ACNGT 6 cut(s) 166, 243, 265, 292, 652, 1171
Bst6I CTCTTC 1 cut(s) 762
BstAPI GCANNNNNTGC 2 cut(s) 737, 1025
BstC8I GCNNGC 5 cut(s) 412, 438, 733, 768, 986
BstDEI CTNAG 5 cut(s) 31, 81, 491, 828, 990
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 514, 628
BstFNI CGCG 2 cut(s) 735, 775
BstHHI GCGC 2 cut(s) 150, 737
BstKTI GATC 4 cut(s) 90, 132, 916, 1084
BstMAI GTCTC 6 cut(s) 9, 13, 186, 527, 548, 906
BstMBI GATC 4 cut(s) 87, 129, 913, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 737, 772, 1025, 1073
BstNI CCWGG 1 cut(s) 997
BstSCI CCNGG 2 cut(s) 631, 995
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 2 cut(s) 735, 775
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 2 cut(s) 948, 1144
BstXI CCANNNNNNTGG 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 766, 988
BtgI CCRYGG 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 2 cut(s) 514, 628
BtsIMutI CAGTG 3 cut(s) 171, 825, 1167
Cac8I GCNNGC 5 cut(s) 412, 438, 733, 768, 986
CciI TCATGA 2 cut(s) 571, 1041
CfoI GCGC 2 cut(s) 150, 737
Cfr13I GGNCC 3 cut(s) 250, 380, 999
CseI GACGC 1 cut(s) 953
Csp6I GTAC 3 cut(s) 234, 258, 1093
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 254, 539, 572, 1042
CviJI RGCY 9 cut(s) 30, 35, 112, 183, 204, 554, 661, 766, 988
CviKI_1 RGCY 9 cut(s) 30, 35, 112, 183, 204, 554, 661, 766, 988
CviQI GTAC 3 cut(s) 234, 258, 1093
DdeI CTNAG 5 cut(s) 31, 81, 491, 828, 990
DpnI GATC 4 cut(s) 89, 131, 915, 1083
DpnII GATC 4 cut(s) 87, 129, 913, 1081
DriI GACNNNNNGTC 1 cut(s) 540
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 762
Eam1105I GACNNNNNGTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 253, 383
Eco147I AGGCCT 1 cut(s) 988
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 3 cut(s) 250, 380, 999
Eco57I CTGAAG 2 cut(s) 78, 941
Eco81I CCTNAGG 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 1125
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 995
EcoT14I CCWWGG 2 cut(s) 253, 383
ErhI CCWWGG 2 cut(s) 253, 383
FaeI CATG 4 cut(s) 257, 542, 575, 1045
FaqI GGGAC 2 cut(s) 356, 738
FatI CATG 4 cut(s) 253, 538, 571, 1041
FbaI TGATCA 2 cut(s) 129, 913
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 2 cut(s) 501, 635
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 1 cut(s) 384
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 2 cut(s) 149, 736
GluI GCNGC 1 cut(s) 738
HaeIII GGCC 2 cut(s) 766, 988
HapII CCGG 1 cut(s) 632
HgaI GACGC 1 cut(s) 953
HhaI GCGC 2 cut(s) 150, 737
Hin1II CATG 4 cut(s) 257, 542, 575, 1045
Hin6I GCGC 2 cut(s) 148, 735
HinP1I GCGC 2 cut(s) 148, 735
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 8 cut(s) 21, 364, 369, 535, 830, 887, 992, 1175
HpaII CCGG 1 cut(s) 632
HphI GGTGA 1 cut(s) 1064
Hpy166II GTNNAC 2 cut(s) 319, 731
Hpy188I TCNGA 5 cut(s) 92, 134, 191, 918, 1188
Hpy188III TCNNGA 7 cut(s) 83, 226, 350, 532, 572, 1042, 1085
Hpy8I GTNNAC 2 cut(s) 319, 731
HpyAV CCTTC 7 cut(s) 53, 83, 275, 280, 518, 538, 1082
HpyCH4III ACNGT 6 cut(s) 166, 243, 265, 292, 652, 1171
HpyCH4IV ACGT 2 cut(s) 727, 1132
HpyCH4V TGCA 9 cut(s) 138, 209, 328, 440, 480, 677, 731, 1012, 1217
HpyF10VI GCNNNNNNNGC 4 cut(s) 737, 772, 1025, 1073
HpyF3I CTNAG 5 cut(s) 31, 81, 491, 828, 990
HpySE526I ACGT 2 cut(s) 727, 1132
Hsp92II CATG 4 cut(s) 257, 542, 575, 1045
HspAI GCGC 2 cut(s) 148, 735
Ksp22I TGATCA 2 cut(s) 129, 913
Kzo9I GATC 4 cut(s) 87, 129, 913, 1081
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 7 cut(s) 125, 565, 779, 843, 999, 1028, 1063
MaeI CTAG 1 cut(s) 384
MaeII ACGT 2 cut(s) 727, 1132
MaeIII GTNAC 5 cut(s) 265, 461, 523, 1120, 1147
MalI GATC 4 cut(s) 89, 131, 915, 1083
MboI GATC 4 cut(s) 87, 129, 913, 1081
MboII GAAGA 5 cut(s) 68, 749, 947, 953, 1149
MhlI GDGCHC 3 cut(s) 357, 733, 757
MlsI TGGCCA 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 766
MlyI GAGTC 6 cut(s) 15, 378, 529, 839, 896, 1001
Mox20I TGGCCA 1 cut(s) 766
MscI TGGCCA 1 cut(s) 766
MseI TTAA 1 cut(s) 1058
MslI CAYNNNNRTG 3 cut(s) 143, 333, 519
Msp20I TGGCCA 1 cut(s) 766
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 2 cut(s) 633, 997
Mva1269I GAATGC 1 cut(s) 1219
MvaI CCWGG 1 cut(s) 997
MvnI CGCG 2 cut(s) 735, 775
MwoI GCNNNNNNNGC 4 cut(s) 737, 772, 1025, 1073
NciI CCSGG 1 cut(s) 633
NcoI CCATGG 1 cut(s) 253
NdeII GATC 4 cut(s) 87, 129, 913, 1081
NlaIII CATG 4 cut(s) 257, 542, 575, 1045
NlaIV GGNNCC 1 cut(s) 1001
NmuCI GTSAC 1 cut(s) 1120
NsbI TGCGCA 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 143
PagI TCATGA 2 cut(s) 571, 1041
PceI AGGCCT 1 cut(s) 988
PciSI GCTCTTC 1 cut(s) 762
PctI GAATGC 1 cut(s) 1219
PfeI GAWTC 2 cut(s) 364, 1175
PfoI TCCNGGA 1 cut(s) 995
PkrI GCNGC 1 cut(s) 739
PleI GAGTC 6 cut(s) 15, 377, 529, 838, 895, 1000
PpsI GAGTC 6 cut(s) 15, 377, 529, 838, 895, 1000
PshBI ATTAAT 1 cut(s) 1058
Psp6I CCWGG 1 cut(s) 995
PspGI CCWGG 1 cut(s) 995
PspN4I GGNNCC 1 cut(s) 1001
PspPI GGNCC 3 cut(s) 250, 380, 999
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 3 cut(s) 235, 259, 1094
RsaNI GTAC 3 cut(s) 234, 258, 1093
RseI CAYNNNNRTG 3 cut(s) 143, 333, 519
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 1 cut(s) 1058
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 4 cut(s) 87, 129, 913, 1081
Sau96I GGNCC 3 cut(s) 250, 380, 999
SchI GAGTC 6 cut(s) 15, 378, 529, 839, 896, 1001
ScrFI CCNGG 2 cut(s) 633, 997
SduI GDGCHC 3 cut(s) 357, 733, 757
SfaNI GCATC 7 cut(s) 125, 565, 779, 843, 999, 1028, 1063
SinI GGWCC 3 cut(s) 250, 380, 999
SmiMI CAYNNNNRTG 3 cut(s) 143, 333, 519
SmlI CTYRAG 2 cut(s) 350, 1142
SmoI CTYRAG 2 cut(s) 350, 1142
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 1 cut(s) 775
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 2 cut(s) 631, 995
StyI CCWWGG 2 cut(s) 253, 383
TaaI ACNGT 6 cut(s) 166, 243, 265, 292, 652, 1171
TaiI ACGT 2 cut(s) 730, 1135
TaqI TCGA 7 cut(s) 225, 273, 279, 367, 531, 646, 908
TfiI GAWTC 2 cut(s) 364, 1175
Tru1I TTAA 1 cut(s) 1058
Tru9I TTAA 1 cut(s) 1058
TscAI CASTG 3 cut(s) 171, 832, 1174
TseFI GTSAC 1 cut(s) 1120
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 1 cut(s) 1120
TspDTI ATGAA 9 cut(s) 175, 327, 460, 564, 596, 639, 749, 1020, 1030
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 3 cut(s) 171, 832, 1174
VneI GTGCAC 1 cut(s) 729
VpaK11BI GGWCC 3 cut(s) 250, 380, 999
VspI ATTAAT 1 cut(s) 1058
XapI RAATTY 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.