RchiOBHm_Chr5g0059731

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016292
Physical Location & Seq
Forward (+)
64796560 .. 64797738
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 771 bp
ATGATGAAGCAGCAGATACAATCTCTTTTCTCACTCCCATTGCTATTCATCCTCCTCTCCCACTGCACCGGAATCTCAGCTCAAGGCCCAGCTGCAAGCCCAAAGGCAGGTCCGATAGCCGACGCTCCAGCACCACCGGGACCAACCAACGTCACCAAAATCCTTGAAAAATCCGGCGGCTTCGACCTCTTCATCCGCCTGTTGAAAACCACCCAAGTCGACGGCCAACTCTACAGCCAACTCAACAACTCCGACAGCAAATTGACCATCTTGGCCCCAACTGACTCTGCCTTCTCGAAACTCAAATCAGGGTCTCTCAACTCCCTCAGCGACTCTCAGAAGGATCAGCTCTTGCAGTTCCATCTCATCCCAGATTTTCTCACCATGTCAAACTTCCAAACTCTCAGCAACCCGGTTCGAACCCAAGCCGGAGACCAGTTTGAGTTCCCGCTAAACATTACCACATCTGGAAACTCAGTGAACATTACCACTGGTCTTGTCAACACTTCAATTTCAGGCACTGTGTATACGGATAACCAACTGGCGATTTATCAGGTCGACAGTGTGCTACAGCCTTATGGGATTTTCGCTCCCAAGCCTCTGCCCCCTTCCCCAGCACCAGCACCGGAAAAGGCAAAGCCTAAAAAAAAGGCTTCAAGCCCAGTTGCCGCTGTGAAATCTGCTGCAGGGTCGGTAGTCTGTGATCTCTCCAGAAATGGGTTGGCCTCCATTGGAGTTGCTGTGGTGTTTGCAGCGGTAATGTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

256

Amino Acids

26.95

Weight (kDa)

9.04

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 60 - 192 4.1e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016292)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32680
malus_domestica MD03G1114600.v1.1 MD03G1114700.v1.1 MD11G1133200.v1.1
prunus_persica Prupe.6G099400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0059731
rosa_laevigata RLG00000035325
rosa_multiflora Rmu_sc0000660.1_g000030
rosa_roxburghii Rroxscaffold_1G00020870
rosa_rugosa Rorug05G0324800
rosa_samantha Rh5AG390200 Rh5BG401600 Rh5CG425700 Rh5DG418000
rosa_wichuraiana Rw5G036700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccI GTMKAC 3 cut(s) 219, 527, 558
AciI CCGC 5 cut(s) 177, 196, 449, 669, 755
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 107, 717
AgsI TTSAA 4 cut(s) 167, 205, 510, 657
AluBI AGCT 3 cut(s) 80, 92, 349
AluI AGCT 3 cut(s) 80, 92, 349
Alw26I GTCTC 2 cut(s) 318, 426
AlwI GGATC 1 cut(s) 351
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 4 cut(s) 85, 223, 273, 723
ApeKI GCWGC 4 cut(s) 10, 92, 683, 752
AspS9I GGNCC 4 cut(s) 86, 110, 140, 274
AsuC2I CCSGG 2 cut(s) 138, 413
AsuHPI GGTGA 2 cut(s) 145, 373
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 2 cut(s) 110, 140
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 4 cut(s) 22, 79, 670, 764
BccI CCATC 2 cut(s) 275, 369
BceAI ACGGC 1 cut(s) 238
BcnI CCSGG 2 cut(s) 138, 413
BcoDI GTCTC 2 cut(s) 318, 426
BfmI CTRYAG 3 cut(s) 232, 569, 684
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 6 cut(s) 11, 93, 178, 669, 684, 753
BlsI GCNGC 6 cut(s) 12, 94, 179, 670, 685, 754
Bme1390I CCNGG 2 cut(s) 138, 413
Bme18I GGWCC 2 cut(s) 110, 140
BmgT120I GGNCC 4 cut(s) 86, 110, 140, 274
BmiI GGNNCC 2 cut(s) 141, 276
BmrFI CCNGG 2 cut(s) 138, 413
BmrI ACTGGG 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 656
BpmI CTGGAG 2 cut(s) 111, 694
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 138, 413
BsaI GGTCTC 2 cut(s) 318, 426
BsaWI WCCGGW 2 cut(s) 68, 625
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 717
Bse1I ACTGG 4 cut(s) 436, 496, 546, 662
Bse3DI GCAATG 1 cut(s) 38
BseGI GGATG 3 cut(s) 48, 192, 366
BseLI CCNNNNNNNGG 2 cut(s) 107, 717
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 5 cut(s) 90, 340, 350, 418, 489
BseNI ACTGG 4 cut(s) 436, 496, 546, 662
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 22, 79, 670, 764
BseYI CCCAGC 2 cut(s) 88, 613
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 4 cut(s) 87, 225, 275, 725
BsiSI CCGG 6 cut(s) 69, 137, 174, 413, 429, 626
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 107, 717
BsmAI GTCTC 2 cut(s) 318, 426
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 4 cut(s) 87, 225, 275, 725
Bso31I GGTCTC 2 cut(s) 318, 426
Bsp119I TTCGAA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 343, 703
BspACI CCGC 5 cut(s) 177, 196, 449, 669, 755
BspANI GGCC 4 cut(s) 87, 225, 275, 725
BspCNI CTCAG 5 cut(s) 89, 339, 349, 417, 488
BspLI GGNNCC 2 cut(s) 141, 276
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 318, 426
BsrDI GCAATG 1 cut(s) 38
BsrI ACTGG 4 cut(s) 436, 496, 546, 662
BssMI GATC 2 cut(s) 343, 703
BssNAI GTATAC 1 cut(s) 528
Bst1107I GTATAC 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 523, 563
Bst6I CTCTTC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 5 cut(s) 76, 326, 336, 404, 475
BstF5I GGATG 3 cut(s) 48, 192, 366
BstKTI GATC 2 cut(s) 346, 706
BstMAI GTCTC 2 cut(s) 318, 426
BstMBI GATC 2 cut(s) 343, 703
BstSCI CCNGG 2 cut(s) 136, 411
BstSFI CTRYAG 3 cut(s) 232, 569, 684
BstV1I GCAGC 4 cut(s) 22, 79, 670, 764
BstZ17I GTATAC 1 cut(s) 528
BsuRI GGCC 4 cut(s) 87, 225, 275, 725
BtsCI GGATG 3 cut(s) 48, 192, 366
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 5 cut(s) 61, 483, 489, 519, 568
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 86, 110, 140, 274
CseI GACGC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 1 cut(s) 385
DdeI CTNAG 5 cut(s) 76, 326, 336, 404, 475
DpnI GATC 2 cut(s) 345, 705
DpnII GATC 2 cut(s) 343, 703
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 1 cut(s) 185
Eco31I GGTCTC 2 cut(s) 318, 426
Eco47I GGWCC 2 cut(s) 110, 140
FaeI CATG 1 cut(s) 388
FaiI YATR 3 cut(s) 386, 528, 579
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 456
FblI GTMKAC 3 cut(s) 219, 527, 558
Fnu4HI GCNGC 6 cut(s) 11, 93, 178, 669, 684, 753
FokI GGATG 3 cut(s) 35, 179, 353
Fsp4HI GCNGC 6 cut(s) 11, 93, 178, 669, 684, 753
GluI GCNGC 6 cut(s) 11, 93, 178, 669, 684, 753
GsaI CCCAGC 2 cut(s) 92, 617
GsuI CTGGAG 2 cut(s) 111, 694
HaeIII GGCC 4 cut(s) 87, 225, 275, 725
HapII CCGG 6 cut(s) 69, 137, 174, 413, 429, 626
HgaI GACGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 3 cut(s) 220, 502, 559
HindII GTYRAC 3 cut(s) 220, 502, 559
HinfI GANTC 3 cut(s) 72, 284, 332
HpaII CCGG 6 cut(s) 69, 137, 174, 413, 429, 626
HphI GGTGA 2 cut(s) 145, 373
Hpy166II GTNNAC 5 cut(s) 220, 481, 502, 528, 559
Hpy188I TCNGA 3 cut(s) 114, 253, 339
Hpy188III TCNNGA 3 cut(s) 295, 468, 711
Hpy8I GTNNAC 5 cut(s) 220, 481, 502, 528, 559
Hpy99I CGWCG 2 cut(s) 125, 224
HpyAV CCTTC 3 cut(s) 301, 334, 618
HpyCH4III ACNGT 2 cut(s) 523, 563
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 66, 95, 355, 686, 752
HpyF3I CTNAG 5 cut(s) 76, 326, 336, 404, 475
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 2 cut(s) 343, 703
LmnI GCTCC 2 cut(s) 130, 595
Lsp1109I GCAGC 4 cut(s) 22, 79, 670, 764
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 345, 705
MboI GATC 2 cut(s) 343, 703
MboII GAAGA 1 cut(s) 181
MluCI AATT 2 cut(s) 260, 510
MlyI GAGTC 2 cut(s) 278, 326
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 6 cut(s) 62, 65, 197, 335, 609, 736
MspA1I CMGCKG 3 cut(s) 92, 671, 755
MspI CCGG 6 cut(s) 69, 137, 174, 413, 429, 626
MspR9I CCNGG 2 cut(s) 138, 413
NciI CCSGG 2 cut(s) 138, 413
NdeII GATC 2 cut(s) 343, 703
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 141, 276
NmuCI GTSAC 1 cut(s) 151
NspV TTCGAA 1 cut(s) 418
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 6 cut(s) 12, 94, 179, 670, 685, 754
PleI GAGTC 2 cut(s) 278, 326
PpsI GAGTC 2 cut(s) 278, 326
PspFI CCCAGC 2 cut(s) 88, 613
PspN4I GGNNCC 2 cut(s) 141, 276
PspPI GGNCC 4 cut(s) 86, 110, 140, 274
PstI CTGCAG 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 92
SalI GTCGAC 2 cut(s) 218, 557
SatI GCNGC 6 cut(s) 11, 93, 178, 669, 684, 753
Sau3AI GATC 2 cut(s) 343, 703
Sau96I GGNCC 4 cut(s) 86, 110, 140, 274
SchI GAGTC 2 cut(s) 278, 326
ScrFI CCNGG 2 cut(s) 138, 413
SetI ASST 7 cut(s) 82, 94, 112, 153, 189, 351, 558
SfcI CTRYAG 3 cut(s) 232, 569, 684
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 2 cut(s) 110, 140
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 260, 510
SsiI CCGC 5 cut(s) 177, 196, 449, 669, 755
StyD4I CCNGG 2 cut(s) 136, 411
TaaI ACNGT 2 cut(s) 523, 563
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 183, 219, 296, 418, 558
TasI AATT 2 cut(s) 260, 510
TauI GCSGC 2 cut(s) 180, 671
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 5 cut(s) 68, 483, 496, 526, 568
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 10, 92, 683, 752
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 20, 37, 181
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 5 cut(s) 68, 483, 496, 526, 568
VpaK11BI GGWCC 2 cut(s) 110, 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XmiI GTMKAC 3 cut(s) 219, 527, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.