Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016443

Physical Location & Seq

Genomic Coordinates Forward (+)

73545559 .. 73550379

Gene Structure 4821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGAGGAAGGTGATGAGAGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCGGTGTCAATCCCAAATCTTCAGGAAACTCGAAAACTGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATGCATATGTAATGAGAACTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGACCCACGCAGTAGATACAAGGAAGCCTACAGATAAATGGTTGGGATTGAGAGGAAAAGATGCTACGAGCTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGTTATCACAAACGTTGTAAGAGAGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

10.54

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	33 - 91	7e-10	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118381 RchiOBHm_Chr5g0036461 RchiOBHm_Chr5g0067381 RchiOBHm_Chr6g0305371 RchiOBHm_Chr7g0214071
rosa_laevigata	RLG00000034614
rosa_roxburghii	Rroxscaffold_4G00316410
rosa_rugosa	Rorug03G0188300.1 Rorug04G0050200 Rorug04G0050300 Rorug05G0296500
rosa_samantha	Rh1AG221600 Rh3AG267500
rosa_wichuraiana	Rw3G025160 Rw5G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclI	AACGTT	1 cut(s)	348
AcuI	CTGAAG	2 cut(s)	59, 288
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	119, 297, 302
AluI	AGCT	3 cut(s)	119, 297, 302
Alw21I	GWGCWC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AsuC2I	CCSGG	2 cut(s)	36, 56
AsuHPI	GGTGA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BcnI	CCSGG	2 cut(s)	36, 56
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	36, 56
BmrFI	CCNGG	2 cut(s)	36, 56
BmsI	GCATC	2 cut(s)	130, 277
Bpu1102I	GCTNAGC	1 cut(s)	298
BpuMI	CCSGG	2 cut(s)	36, 56
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	35, 56
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	34, 54
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	145
CviAII	CATG	2 cut(s)	28, 211
CviJI	RGCY	5 cut(s)	119, 253, 297, 302, 326
CviKI_1	RGCY	5 cut(s)	119, 253, 297, 302, 326
DdeI	CTNAG	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	59, 288
EcoICRI	GAGCTC	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	2 cut(s)	31, 214
FaiI	YATR	5 cut(s)	29, 154, 156, 186, 212
FatI	CATG	2 cut(s)	27, 210
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	2 cut(s)	35, 56
Hin1II	CATG	2 cut(s)	31, 214
HinfI	GANTC	4 cut(s)	39, 98, 214, 311
HpaII	CCGG	2 cut(s)	35, 56
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	44, 307
Hpy188III	TCNNGA	2 cut(s)	77, 315
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	31, 122, 143, 152, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	31, 214
LpnPI	CCDG	4 cut(s)	48, 62, 69, 77
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	2 cut(s)	130, 277
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	348
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	48, 320
MnlI	CCTC	3 cut(s)	217, 272, 352
Mph1103I	ATGCAT	1 cut(s)	154
MspI	CCGG	2 cut(s)	35, 56
MspR9I	CCNGG	2 cut(s)	36, 56
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	2 cut(s)	36, 56
NdeI	CATATG	1 cut(s)	154
NlaIII	CATG	2 cut(s)	31, 214
NsiI	ATGCAT	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	98, 214
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	47, 319
PpsI	GAGTC	2 cut(s)	47, 319
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	299
SatI	GCNGC	1 cut(s)	120
SchI	GAGTC	2 cut(s)	48, 320
ScrFI	CCNGG	2 cut(s)	36, 56
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	6 cut(s)	15, 121, 128, 299, 304, 351
SfaNI	GCATC	2 cut(s)	130, 277
SfcI	CTRYAG	1 cut(s)	255
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	34, 54
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	98, 214
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	129, 227
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.