Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016443

Physical Location & Seq

Genomic Coordinates Reverse (-)

31250760 .. 31255558

Gene Structure 4799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19157

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGAGAGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCGGTGTCAATCCCAAATCTTCAGGAAACTAGAAAAATGGTAGAATCCATCTCCCTTGATGAAGCTGCAAGGTTATTACTTGGGGATGCACACAATACATCCGTAATGAGAACTAAAGTAAGGCGGATTTATGATATTGCAAATGTTTCGTCCTCCATGAATCTTATTGAAAAGACCCATGCAGTAGATACAAGGAAGCCTGCATACAAATGGTTGGGATTGAGAGGAAAAGATGCTACGAGTTCAGCTTCAGACGAGTCTAGAAAAAGAGCCTTTGGAACAGATATCACAAACGTTGTAAGAGGGGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

118

Amino Acids

13.19

Weight (kDa)

10.5

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	28 - 87	1.7e-11	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016443)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118381 RchiOBHm_Chr5g0036461 RchiOBHm_Chr5g0067381 RchiOBHm_Chr6g0305371 RchiOBHm_Chr7g0214071
rosa_laevigata	RLG00000034614
rosa_roxburghii	Rroxscaffold_4G00316410
rosa_rugosa	Rorug03G0188300.1 Rorug04G0050200 Rorug04G0050300 Rorug05G0296500
rosa_samantha	Rh1AG221600 Rh3AG267500
rosa_wichuraiana	Rw3G025160 Rw5G041480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AclI	AACGTT	1 cut(s)	336
AcuI	CTGAAG	2 cut(s)	47, 276
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	2 cut(s)	107, 290
AluI	AGCT	2 cut(s)	107, 290
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuC2I	CCSGG	2 cut(s)	24, 44
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BcnI	CCSGG	2 cut(s)	24, 44
BfaI	CTAG	2 cut(s)	72, 303
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	24, 44
BmrFI	CCNGG	2 cut(s)	24, 44
BmsI	GCATC	2 cut(s)	118, 265
BpuMI	CCSGG	2 cut(s)	24, 44
BsaJI	CCNNGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	133, 140
BseXI	GCAGC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	23, 44
BspACI	CCGC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	133, 140
BstSCI	CCNGG	2 cut(s)	22, 42
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	133, 140
Cac8I	GCNNGC	1 cut(s)	243
CviAII	CATG	3 cut(s)	16, 199, 221
CviJI	RGCY	4 cut(s)	107, 241, 290, 314
CviKI_1	RGCY	4 cut(s)	107, 241, 290, 314
EciI	GGCGGA	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	47, 276
EcoRV	GATATC	1 cut(s)	328
FaeI	CATG	3 cut(s)	19, 202, 224
FaiI	YATR	5 cut(s)	17, 174, 200, 222, 247
FatI	CATG	3 cut(s)	15, 198, 220
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	127, 140
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	72, 303
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	2 cut(s)	23, 44
Hin1II	CATG	3 cut(s)	19, 202, 224
HinfI	GANTC	4 cut(s)	27, 86, 202, 299
HpaII	CCGG	2 cut(s)	23, 44
Hpy188I	TCNGA	2 cut(s)	32, 295
Hpy188III	TCNNGA	2 cut(s)	65, 303
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	6 cut(s)	19, 110, 131, 182, 224, 245
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	19, 202, 224
LpnPI	CCDG	4 cut(s)	36, 50, 57, 255
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	118, 265
MaeI	CTAG	2 cut(s)	72, 303
MaeII	ACGT	1 cut(s)	336
MboII	GAAGA	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	36, 308
MnlI	CCTC	3 cut(s)	205, 260, 338
MslI	CAYNNNNRTG	1 cut(s)	250
MspI	CCGG	2 cut(s)	23, 44
MspR9I	CCNGG	2 cut(s)	24, 44
NciI	CCSGG	2 cut(s)	24, 44
NlaIII	CATG	3 cut(s)	19, 202, 224
PfeI	GAWTC	2 cut(s)	86, 202
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	35, 307
PpsI	GAGTC	2 cut(s)	35, 307
Psp1406I	AACGTT	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	250
SatI	GCNGC	1 cut(s)	108
SchI	GAGTC	2 cut(s)	36, 308
ScrFI	CCNGG	2 cut(s)	24, 44
SetI	ASST	4 cut(s)	109, 116, 292, 339
SfaNI	GCATC	2 cut(s)	118, 265
SmiMI	CAYNNNNRTG	1 cut(s)	250
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	72, 303
StyD4I	CCNGG	2 cut(s)	22, 42
TaiI	ACGT	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	86, 202
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	117, 215
TspGWI	ACGGA	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	302
XspI	CTAG	2 cut(s)	72, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.