Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Forward (+)

7778042 .. 7782234

Gene Structure 4193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0050200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGGCCATTCTTGTTCTGAGCACAGCCTCTGTTTCGGGGTCTCTCAACCCCAAACGTCTTTCTATTTTTTGCCATCAATCACAATCTTCGCAAAATCGAGCTCTAGCACGCAAGATAATCCGGACATGGAAGCAGGAAGAGTGTTTCAATGGGAAAGATAATTATGTAGATTGTGTACCGCTAATACAGAGTTTAAGTAGACAAAAGATGCCTCATATAGCTCAGGAGGTTTTACTTGAGATGAAATCGGATGGTCTTGTGCCAAGTAACTCCACTCTATCTGCTGTAATGCTATGTCATGCGAAGAATGGCCTTTTCCCTCAAGCTGAGGCAATTTGGGACGAAATGTTGAACAGCTCTTTTGTGCCCAGTATTCAGGTTGTGGCGGAGCTATTTGATGTTTATGGCAATGTGGGATGTTTCCGAAAGGTAAATGAAATTGTGGGTCAGATAAGATCGAGGAATTTAAGTTTGTTACCGGAGGTTTACTCACTAGCTATCTCTTGCTTTGGGAAGGGAGGACAGCTTAAATTGATGGAAGATACATTGAAAGAAATGGTATCAATGGGCTTCCCTGTAGACTCGGTCACTGGTAATGTTTTTATTAGGTACTATAGCATTTTTGGTTCTCTGACTGAAATGGAGACTGCTTATGGTCGCCTTAAGAGATCCAGGTTTTTGATAGAGGAAGAGGGAATCAGGGCAATGTCTTTGGCGTATCTAAAGAAAAGGAAGTTTTATAGTTTAGCTGAGTTCCTGAAGAGTGTTGGTCTAGGTAGAAGAAACTTGGGAAATCTTTTATGGAACCTATTGTTGCTATCCTATGCTGCCAATTTTAAGATGAAAAGCTTACAAAGAGAATTTCTGAGAATGGTGGAAGCTGGATTCCACCCTGATCTCACTACGTTTAATATTCGTGCTCTGGCTTTTTCAAGAATGTCTCTGCTCTGGGATCTCCATCTTACTCTTGAACACATGAAACATGAGAAAGTTGTTCCTGATCTTGTCACTTGTGGTTGTATTGTTGACGCATACTTGGATAGAAGACTGGGAAGAAACTTGTATTTTGCTTTAAACAAAATGAACTTGGATGATTCTCCGGTAGTCTTAACAGATCCATTTGTATTTGAAGTTCTGGGGAAAGGCGACTTCCATGCAAGCTCAGAGGCATTTTTGGAGTTTCGGAAGCAGAAGGAATGGACTTATAGGAAGCTAATTTCAGTATATTTGAAAAAGCAATATCGGAGGGACCAGATATTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

424

Amino Acids

48.64

Weight (kDa)

9.16

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	202, 582
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	2 cut(s)	182, 389
AclWI	GGATC	3 cut(s)	666, 963, 1112
AcsI	RAATTY	2 cut(s)	466, 863
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	2 cut(s)	180, 614
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	7 cut(s)	151, 355, 553, 936, 974, 1133, 1234
AjnI	CCWGG	1 cut(s)	674
Alw21I	GWGCWC	3 cut(s)	26, 106, 925
Alw26I	GTCTC	3 cut(s)	48, 641, 948
AlwI	GGATC	3 cut(s)	666, 963, 1112
AlwNI	CAGNNNCTG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	2 cut(s)	6, 313
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	2 cut(s)	466, 863
AspS9I	GGNCC	1 cut(s)	1252
AvaII	GGWCC	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	1054
Bbv12I	GWGCWC	3 cut(s)	26, 106, 925
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	4 cut(s)	84, 248, 532, 969
BcgI	CGANNNNNNTGC	2 cut(s)	1139, 1173
BciT130I	CCWGG	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	48, 641, 948
BfaI	CTAG	3 cut(s)	107, 497, 776
BfmI	CTRYAG	2 cut(s)	579, 616
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	1 cut(s)	831
BlsI	GCNGC	1 cut(s)	832
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	1 cut(s)	1252
BmgT120I	GGNCC	1 cut(s)	1252
BmiI	GGNNCC	2 cut(s)	809, 1253
BmrFI	CCNGG	1 cut(s)	676
BmrI	ACTGGG	2 cut(s)	366, 1061
BmsI	GCATC	1 cut(s)	201
BmuI	ACTGGG	2 cut(s)	366, 1061
BpiI	GAAGAC	1 cut(s)	1054
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bpu10I	CCTNAGC	2 cut(s)	225, 330
BpuEI	CTTGAG	2 cut(s)	260, 309
BsaBI	GATNNNNATC	1 cut(s)	960
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	3 cut(s)	123, 481, 1102
Bse1I	ACTGG	3 cut(s)	372, 598, 1056
Bse3DI	GCAATG	2 cut(s)	418, 714
Bse8I	GATNNNNATC	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	676
BseGI	GGATG	3 cut(s)	259, 425, 1099
BseJI	GATNNNNATC	1 cut(s)	960
BseMI	GCAATG	2 cut(s)	418, 714
BseMII	CTCAG	6 cut(s)	11, 239, 321, 744, 860, 1179
BseNI	ACTGG	3 cut(s)	372, 598, 1056
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	817
BshFI	GGCC	2 cut(s)	8, 315
BsiHKAI	GWGCWC	3 cut(s)	26, 106, 925
BsiSI	CCGG	3 cut(s)	124, 482, 1103
BslFI	GGGAC	2 cut(s)	356, 1265
BsmAI	GTCTC	3 cut(s)	48, 641, 948
BsmFI	GGGAC	2 cut(s)	356, 1265
BsnI	GGCC	2 cut(s)	8, 315
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	4 cut(s)	26, 106, 372, 925
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
BspACI	CCGC	2 cut(s)	182, 389
BspANI	GGCC	2 cut(s)	8, 315
BspCNI	CTCAG	6 cut(s)	12, 238, 322, 745, 861, 1178
BspEI	TCCGGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	809, 1253
BspPI	GGATC	3 cut(s)	666, 963, 1112
BspTI	CTTAAG	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	2 cut(s)	418, 714
BsrI	ACTGG	3 cut(s)	372, 598, 1056
BssMI	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
Bst2UI	CCWGG	1 cut(s)	676
Bst6I	CTCTTC	3 cut(s)	135, 687, 758
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	112, 1162
BstDEI	CTNAG	6 cut(s)	20, 225, 330, 753, 869, 1165
BstF5I	GGATG	3 cut(s)	259, 425, 1099
BstKTI	GATC	6 cut(s)	461, 674, 901, 958, 1006, 1120
BstMAI	GTCTC	3 cut(s)	48, 641, 948
BstMBI	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
BstNI	CCWGG	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	674
BstSFI	CTRYAG	2 cut(s)	579, 616
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	817
BstV2I	GAAGAC	1 cut(s)	1054
BstX2I	RGATCY	3 cut(s)	671, 955, 1117
BstYI	RGATCY	3 cut(s)	671, 955, 1117
BsuRI	GGCC	2 cut(s)	8, 315
BtsCI	GGATG	3 cut(s)	259, 425, 1099
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	112, 1162
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	1252
CseI	GACGC	1 cut(s)	1040
Csp6I	GTAC	2 cut(s)	179, 613
CviAII	CATG	5 cut(s)	129, 302, 979, 986, 1157
CviQI	GTAC	2 cut(s)	179, 613
DdeI	CTNAG	6 cut(s)	20, 225, 330, 753, 869, 1165
DpnI	GATC	6 cut(s)	460, 673, 900, 957, 1005, 1119
DpnII	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
DraI	TTTAAA	1 cut(s)	1077
Eam1104I	CTCTTC	3 cut(s)	135, 687, 758
EarI	CTCTTC	3 cut(s)	135, 687, 758
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	1252
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	5 cut(s)	132, 305, 982, 989, 1160
FaqI	GGGAC	2 cut(s)	356, 1265
FatI	CATG	5 cut(s)	128, 301, 978, 985, 1156
FblI	GTMKAC	2 cut(s)	202, 582
Fnu4HI	GCNGC	1 cut(s)	831
FokI	GGATG	3 cut(s)	266, 432, 1106
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	831
FspBI	CTAG	3 cut(s)	107, 497, 776
GluI	GCNGC	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	8, 315
HapII	CCGG	3 cut(s)	124, 482, 1103
HgaI	GACGC	1 cut(s)	1040
Hin1II	CATG	5 cut(s)	132, 305, 982, 989, 1160
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	4 cut(s)	584, 699, 888, 1097
HpaII	CCGG	3 cut(s)	124, 482, 1103
Hpy166II	GTNNAC	5 cut(s)	179, 203, 490, 583, 1030
Hpy188I	TCNGA	9 cut(s)	21, 253, 428, 453, 636, 870, 1168, 1188, 1248
Hpy188III	TCNNGA	6 cut(s)	124, 227, 760, 936, 971, 1001
Hpy8I	GTNNAC	5 cut(s)	179, 203, 490, 583, 1030
HpyAV	CCTTC	2 cut(s)	511, 1189
HpyCH4IV	ACGT	2 cut(s)	58, 908
HpyCH4V	TGCA	1 cut(s)	1160
HpyF3I	CTNAG	6 cut(s)	20, 225, 330, 753, 869, 1165
HpySE526I	ACGT	2 cut(s)	58, 908
Hsp92II	CATG	5 cut(s)	132, 305, 982, 989, 1160
Kpn2I	TCCGGA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	817
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	3 cut(s)	107, 497, 776
MaeII	ACGT	2 cut(s)	58, 908
MaeIII	GTNAC	4 cut(s)	269, 477, 589, 1009
MalI	GATC	6 cut(s)	460, 673, 900, 957, 1005, 1119
MboI	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
MboII	GAAGA	9 cut(s)	81, 152, 319, 554, 704, 775, 795, 1059, 1068
MflI	RGATCY	3 cut(s)	671, 955, 1117
MhlI	GDGCHC	4 cut(s)	26, 106, 372, 925
MluCI	AATT	9 cut(s)	163, 336, 441, 466, 533, 835, 863, 1218, 1267
MlyI	GAGTC	1 cut(s)	578
MroI	TCCGGA	1 cut(s)	123
MseI	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1076, 1112
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	3 cut(s)	124, 482, 1103
MspR9I	CCNGG	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	676
NdeII	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
NlaIII	CATG	5 cut(s)	132, 305, 982, 989, 1160
NlaIV	GGNNCC	2 cut(s)	809, 1253
NmuCI	GTSAC	2 cut(s)	589, 1009
PfeI	GAWTC	3 cut(s)	699, 888, 1097
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	832
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	809, 1253
PspPI	GGNCC	1 cut(s)	1252
PsrI	GAACNNNNNNTAC	2 cut(s)	1119, 1151
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	671, 955, 1117
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	2 cut(s)	180, 614
RsaNI	GTAC	2 cut(s)	179, 613
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1076, 1112
SatI	GCNGC	1 cut(s)	831
Sau3AI	GATC	6 cut(s)	458, 671, 898, 955, 1003, 1117
Sau96I	GGNCC	1 cut(s)	1252
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	4 cut(s)	26, 106, 372, 925
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	579, 616
SinI	GGWCC	1 cut(s)	1252
SmlI	CTYRAG	3 cut(s)	239, 324, 665
SmoI	CTYRAG	3 cut(s)	239, 324, 665
Sse9I	AATT	9 cut(s)	163, 336, 441, 466, 533, 835, 863, 1218, 1267
SsiI	CCGC	2 cut(s)	182, 389
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	3 cut(s)	107, 497, 776
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	674
TaiI	ACGT	2 cut(s)	61, 911
TaqI	TCGA	2 cut(s)	100, 461
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	9 cut(s)	163, 336, 441, 466, 533, 835, 863, 1218, 1267
TfiI	GAWTC	3 cut(s)	699, 888, 1097
Tru1I	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1076, 1112
Tru9I	TTAA	8 cut(s)	197, 470, 531, 666, 840, 912, 1076, 1112
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	2 cut(s)	589, 1009
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	2 cut(s)	589, 1009
TspDTI	ATGAA	5 cut(s)	260, 453, 860, 995, 1100
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	1 cut(s)	587
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	1252
XapI	RAATTY	2 cut(s)	466, 863
XmiI	GTMKAC	2 cut(s)	202, 582
XspI	CTAG	3 cut(s)	107, 497, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.