Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006859

Physical Location & Seq

Genomic Coordinates Reverse (-)

11540268 .. 11543081

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGATCTGAATTTCAGTCCAAGCCCTTCAGAGGCGCATCCTGATACGATGGATTTTCTGTCTCTTGCATGGTGCGATTTTGCAGTACAAGCTTTGCAACCAGAGCAACAAGACCACCAATCTCTAGTTCTATTAGATGATCCGATCATCAAGTTTGAGAGCCAAAACAGGATTCAATTCACGAAGTTGGACGAGAATGCACACATGGATGGTGCAGATGTCAAGCCTCCACCACCATGGAAATCTAATGATGTAAAGTCATGGATATGGATGCAACAAGCCATGCATCCAGAATTGAACTACAACAGCTATTTCAGAAAGAAATGGTTGTCATGGAAGATAGTGCCATTCAAGAACATGTCAATTAAGAAGTGGCTGAAGGAGATTAAGGAAAAGCGGAAAGAGGAACACAGGTTGCAAAGAGCTGAAGTCCATGCAGCTATATCTATGGCAGGAGTGGCAGCAGCGCTTGCTACCATTGCGGCTGAAAGCTCTAGAATGAATGAGAGCACTGCCAAGGAAGCAGCAGTGGCTTCTGCTGCTGCTCTGGTGGCAGCACAGTGTGCAAAAGTTGCAGAAGCAATGGGAGCAAAGAAGGAACAGATCAGCAGTGTAATAGGGTCAGCCATGAGTAGTACAAGTGCAAGTGATATCTTAACCCTCACAGCAGCAGCTGCAACATCCTTAAAAGGAGCAGCTACACTTAAAGCAAGATCAGGATGCAAGAATATGCTACACGGGAGTGCACCCGTGCTGCCCATCGAGGACAACCATGAGGTTGACTTCGACTTTGAAAAGTGTAGGTCAATGCTTGGAATGGGTGTGCACCTCAGCATCGAAACACCAGATGGGAAGTACATGGTCAGATCAGTATCTGTCGTCCTAAGCAGTGAAGTCAAGGTTCTTCTTAAAATAAGGAAGCTCAGTCTGATGAAAAGCAAGAAGGAAAGTATTATACTGGACATGCATGCAGAGCTGTATAAAGATTCAGAAGCGGAGACCGGTACTGGTTATCTCATCGTCTTGACAACGAGTAAGGGGACATTCAAACTTGACATGGAAGATGACTATCAACGTTACAAGACATGGGCCACAACCATTAATCATATGCTCATGCTCTCTACTTCATTATCAAAATATCATCTTCAGTTCTACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

388

Amino Acids

43.15

Weight (kDa)

7.7

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	13 - 256	6.4e-71	Auxin canalisation
PH_2	PF08458	277 - 374	4e-19	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57770 AT5G57770
fragaria_vesca	FvH4_4g09670
malus_domestica	MD13G1260700.v1.1 MD16G1262400.v1.1
prunus_persica	Prupe.1G097500_v2.0.a1 Prupe.1G097500_v2.0.a1
pyrus_communis	pycom12494g00080 pycom16g23130
rosa_chinensis	RchiOBHm_Chr4g0404961
rosa_laevigata	RLG00000008893
rosa_multiflora	Rmu_co8264203.1_g000001 Rmu_co8375197.1_g000001 Rmu_sc0000358.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349090
rosa_rugosa	Rorug01G0141800.1 Rorug04G0049800 Rorug04G0049900 Rorug04G0050000 Rorug04G0050100 Rorug04G0050200
rosa_samantha	Rh4AG126200 Rh4BG120400 Rh4CG134400 Rh4DG119900
rosa_wichuraiana	Rw4G010210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	397, 482, 995
AclI	AACGTT	1 cut(s)	1075
AclWI	GGATC	2 cut(s)	12, 134
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	4 cut(s)	12, 398, 447, 1130
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	4 cut(s)	87, 637, 857, 1006
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	357
AgeI	ACCGGT	1 cut(s)	1001
AgsI	TTSAA	5 cut(s)	176, 298, 352, 794, 1048
AjuI	GAANNNNNNNTTGG	4 cut(s)	111, 143, 156, 188
AleI	CACNNNNGTG	1 cut(s)	741
AluBI	AGCT	9 cut(s)	92, 309, 425, 440, 492, 674, 698, 922, 976
AluI	AGCT	9 cut(s)	92, 309, 425, 440, 492, 674, 698, 922, 976
Alw21I	GWGCWC	3 cut(s)	512, 748, 828
Alw26I	GTCTC	2 cut(s)	66, 992
Alw44I	GTGCAC	2 cut(s)	744, 824
AlwI	GGATC	2 cut(s)	12, 134
AlwNI	CAGNNNCTG	2 cut(s)	674, 875
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	1 cut(s)	1089
ApaLI	GTGCAC	2 cut(s)	744, 824
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AseI	ATTAAT	1 cut(s)	1101
AsiGI	ACCGGT	1 cut(s)	1001
AspLEI	GCGC	2 cut(s)	37, 469
AspS9I	GGNCC	1 cut(s)	1089
BaeGI	GKGCMC	2 cut(s)	748, 828
Bbv12I	GWGCWC	3 cut(s)	512, 748, 828
BbvCI	CCTCAGC	1 cut(s)	830
BccI	CCATC	4 cut(s)	43, 203, 767, 842
BcoDI	GTCTC	2 cut(s)	66, 992
BfaI	CTAG	2 cut(s)	125, 495
BfoI	RGCGCY	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	1089
BmsI	GCATC	5 cut(s)	46, 261, 295, 710, 843
Bpu10I	CCTNAGC	2 cut(s)	830, 884
BsaBI	GATNNNNATC	2 cut(s)	871, 1068
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	2 cut(s)	236, 516
BsaWI	WCCGGW	1 cut(s)	1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	1001
Bse1I	ACTGG	2 cut(s)	963, 1012
Bse3DI	GCAATG	2 cut(s)	477, 588
Bse8I	GATNNNNATC	2 cut(s)	871, 1068
BseDI	CCNNGG	2 cut(s)	236, 516
BseGI	GGATG	6 cut(s)	37, 214, 276, 286, 680, 725
BseJI	GATNNNNATC	2 cut(s)	871, 1068
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	477, 588
BseMII	CTCAG	2 cut(s)	844, 937
BseNI	ACTGG	2 cut(s)	963, 1012
BseSI	GKGCMC	2 cut(s)	748, 828
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	1091
BshTI	ACCGGT	1 cut(s)	1001
BsiHKAI	GWGCWC	3 cut(s)	512, 748, 828
BsiSI	CCGG	1 cut(s)	1002
BslFI	GGGAC	1 cut(s)	1054
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	66, 992
BsmFI	GGGAC	1 cut(s)	1054
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	1091
Bso31I	GGTCTC	1 cut(s)	992
Bsp1286I	GDGCHC	3 cut(s)	512, 748, 828
Bsp143I	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	3 cut(s)	397, 482, 995
BspANI	GGCC	1 cut(s)	1091
BspCNI	CTCAG	2 cut(s)	843, 936
BspPI	GGATC	2 cut(s)	12, 134
BspTNI	GGTCTC	1 cut(s)	992
BsrDI	GCAATG	2 cut(s)	477, 588
BsrFI	RCCGGY	1 cut(s)	1001
BsrI	ACTGG	2 cut(s)	963, 1012
BssAI	RCCGGY	1 cut(s)	1001
BssECI	CCNNGG	2 cut(s)	236, 516
BssMI	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
BssT1I	CCWWGG	2 cut(s)	236, 516
Bst4CI	ACNGT	1 cut(s)	561
BstAPI	GCANNNNNTGC	4 cut(s)	470, 563, 572, 674
BstC8I	GCNNGC	2 cut(s)	471, 969
BstDEI	CTNAG	3 cut(s)	830, 884, 923
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	6 cut(s)	37, 214, 276, 286, 680, 725
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	37, 469
BstKTI	GATC	6 cut(s)	7, 142, 147, 606, 716, 869
BstMAI	GTCTC	2 cut(s)	66, 992
BstMBI	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
BstNSI	RCATGY	3 cut(s)	361, 967, 971
BstSLI	GKGCMC	2 cut(s)	748, 828
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	1091
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	6 cut(s)	37, 214, 276, 286, 680, 725
BtsI	GCAGTG	4 cut(s)	510, 534, 616, 895
BtsIMutI	CAGTG	5 cut(s)	510, 534, 566, 616, 895
Cac8I	GCNNGC	2 cut(s)	471, 969
CaiI	CAGNNNCTG	2 cut(s)	674, 875
CfoI	GCGC	2 cut(s)	37, 469
Cfr10I	RCCGGY	1 cut(s)	1001
Cfr13I	GGNCC	1 cut(s)	1089
Csp6I	GTAC	4 cut(s)	86, 636, 856, 1005
CspAI	ACCGGT	1 cut(s)	1001
CviQI	GTAC	4 cut(s)	86, 636, 856, 1005
DdeI	CTNAG	3 cut(s)	830, 884, 923
DpnI	GATC	6 cut(s)	6, 141, 146, 605, 715, 868
DpnII	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
DraIII	CACNNNGTG	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	236, 516
Eco31I	GGTCTC	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	652
Eco47III	AGCGCT	1 cut(s)	468
Eco57I	CTGAAG	4 cut(s)	12, 398, 447, 1130
EcoRV	GATATC	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	236, 516
EcoT22I	ATGCAT	2 cut(s)	288, 969
ErhI	CCWWGG	2 cut(s)	236, 516
FaqI	GGGAC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	1107
FokI	GGATG	6 cut(s)	24, 221, 273, 283, 667, 732
FspBI	CTAG	2 cut(s)	125, 495
GlaI	GCGC	2 cut(s)	36, 468
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	1091
HapII	CCGG	1 cut(s)	1002
HhaI	GCGC	2 cut(s)	37, 469
Hin6I	GCGC	2 cut(s)	35, 467
HinP1I	GCGC	2 cut(s)	35, 467
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	172, 986
HpaII	CCGG	1 cut(s)	1002
Hpy166II	GTNNAC	3 cut(s)	746, 781, 826
Hpy188I	TCNGA	7 cut(s)	9, 31, 144, 317, 866, 930, 991
Hpy188III	TCNNGA	7 cut(s)	41, 181, 290, 352, 495, 717, 1024
Hpy8I	GTNNAC	3 cut(s)	746, 781, 826
HpyAV	CCTTC	4 cut(s)	36, 373, 589, 937
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	1075
HpyF3I	CTNAG	3 cut(s)	830, 884, 923
HpySE526I	ACGT	1 cut(s)	1075
HspAI	GCGC	2 cut(s)	35, 467
Kzo9I	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
LmnI	GCTCC	2 cut(s)	587, 692
LweI	GCATC	5 cut(s)	46, 261, 295, 710, 843
MaeI	CTAG	2 cut(s)	125, 495
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	1 cut(s)	1076
MalI	GATC	6 cut(s)	6, 141, 146, 605, 715, 868
MboI	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
MboII	GAAGA	4 cut(s)	349, 896, 1073, 1136
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	512, 748, 828
MluCI	AATT	4 cut(s)	10, 176, 293, 363
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	25, 237, 397, 671, 757, 769, 839
Mph1103I	ATGCAT	2 cut(s)	288, 969
MseI	TTAA	7 cut(s)	366, 387, 656, 686, 705, 909, 1101
MslI	CAYNNNNRTG	4 cut(s)	207, 235, 265, 741
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	1107
NdeII	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
NsiI	ATGCAT	2 cut(s)	288, 969
NspI	RCATGY	3 cut(s)	361, 967, 971
OliI	CACNNNNGTG	1 cut(s)	741
PaeI	GCATGC	1 cut(s)	971
PciI	ACATGT	1 cut(s)	357
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	172, 986
PinAI	ACCGGT	1 cut(s)	1001
PscI	ACATGT	1 cut(s)	357
PshBI	ATTAAT	1 cut(s)	1101
Psp1406I	AACGTT	1 cut(s)	1075
PspPI	GGNCC	1 cut(s)	1089
PstNI	CAGNNNCTG	2 cut(s)	674, 875
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	4 cut(s)	87, 637, 857, 1006
RsaNI	GTAC	4 cut(s)	86, 636, 856, 1005
RseI	CAYNNNNRTG	4 cut(s)	207, 235, 265, 741
SaqAI	TTAA	7 cut(s)	366, 387, 656, 686, 705, 909, 1101
Sau3AI	GATC	6 cut(s)	4, 139, 144, 603, 713, 866
Sau96I	GGNCC	1 cut(s)	1089
SduI	GDGCHC	3 cut(s)	512, 748, 828
SfaNI	GCATC	5 cut(s)	46, 261, 295, 710, 843
SmiMI	CAYNNNNRTG	4 cut(s)	207, 235, 265, 741
SphI	GCATGC	1 cut(s)	971
Sse9I	AATT	4 cut(s)	10, 176, 293, 363
SsiI	CCGC	3 cut(s)	397, 482, 995
SspMI	CTAG	2 cut(s)	125, 495
StyI	CCWWGG	2 cut(s)	236, 516
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	3 cut(s)	762, 786, 837
TasI	AATT	4 cut(s)	10, 176, 293, 363
TatI	WGTACW	3 cut(s)	85, 635, 855
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	172, 986
Tru1I	TTAA	7 cut(s)	366, 387, 656, 686, 705, 909, 1101
Tru9I	TTAA	7 cut(s)	366, 387, 656, 686, 705, 909, 1101
TscAI	CASTG	5 cut(s)	517, 534, 566, 616, 895
TspDTI	ATGAA	3 cut(s)	515, 947, 1116
TspRI	CASTG	5 cut(s)	517, 534, 566, 616, 895
VneI	GTGCAC	2 cut(s)	744, 824
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	3 cut(s)	361, 967, 971
XspI	CTAG	2 cut(s)	125, 495
Zsp2I	ATGCAT	2 cut(s)	288, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.